BtaALTD0008077-2/3 @ bosTau6
Alternative 5'ss
Gene
ENSBTAG00000048071 | EXOSC2
Description
Bos taurus exosome component 2 (EXOSC2), mRNA. [Source:RefSeq mRNA;Acc:NM_001046561]
Coordinates
chr11:100999393-101001198:+
Coord C1 exon
chr11:100999393-100999494
Coord A exon
chr11:100999495-100999507
Coord C2 exon
chr11:101001153-101001198
Length
13 bp
Sequences
Splice sites
5' ss Seq
AAGGTGTGT
5' ss Score
6.64
3' ss Seq
CCTTCTGCTTTTTCTTTCAGATA
3' ss Score
12.86
Exon sequences
Seq C1 exon
GGGCCATGGAACCTATATGGGGGAAGAGAAGCTCATTGCATCTGTGGCTGGCTCCGTGGAGAGAGTAAACAAGTTGATCTGTGTAAAAGCTTTGAAAACCAG
Seq A exon
GTGAGAGCAAAAG
Seq C2 exon
ATATAATGGTGAAGTGGGAGACATTGTAGTGGGGAGAATCACAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000048071-3-3,4-3,5-3-2/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.029 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF143821=ECR1_N=PD(59.0=65.7)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTCATTGCATCTGTGGCTG
R:
TCCCCACTACAATGTCTCCCA
Band lengths:
108-121
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development