MmuALTD0005106-2/2 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000039356 | Exosc2
Description
exosome component 2 [Source:MGI Symbol;Acc:MGI:2385133]
Coordinates
chr2:31672472-31674560:+
Coord C1 exon
chr2:31672472-31672573
Coord A exon
chr2:31672574-31672586
Coord C2 exon
chr2:31674515-31674560
Length
13 bp
Sequences
Splice sites
5' ss Seq
AAGGTGTGT
5' ss Score
6.64
3' ss Seq
GCTTCTGTTTTCTCTTGCAGATA
3' ss Score
13.45
Exon sequences
Seq C1 exon
GGGCCATGGGACATACATGGGGGAAGAGAAGCTCATTGCGTCTGTGGCCGGCTCTGTGGAGAGAGTGAACAAACTGATCTGTGTCAAAGCCTTGAAAACCAG
Seq A exon
GTGAGGACAGAAG
Seq C2 exon
ATACAATGGAGAGGTCGGAGACATTGTAGTGGGGAGAATCACAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039356-5-3,6-3-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.029 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF143821=ECR1_N=PD(59.0=65.7)
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGGGAAGAGAAGCTCATTGC
R:
TGTCTCCGACCTCTCCATTGT
Band lengths:
107-120
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types