RnoALTD0010798-2/2 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000009245 | Exosc2
Description
exosome component 2 [Source:RGD Symbol;Acc:1306573]
Coordinates
chr3:10158481-10160622:-
Coord C1 exon
chr3:10160521-10160622
Coord A exon
chr3:10160509-10160520
Coord C2 exon
chr3:10158481-10158526
Length
12 bp
Sequences
Splice sites
5' ss Seq
GAGGTGTGT
5' ss Score
6.14
3' ss Seq
GCTTCTGTTTTCTCTTGCAGATA
3' ss Score
13.45
Exon sequences
Seq C1 exon
GGGCCATGGAACATACATGGGGGAGGAAAAGCTCATTGCGTCAGTGGCCGGCTCTGTGGAGAGAGTGAACAAGCTGATCTGTGTCAAAGCCTTGAAAACCAG
Seq A exon
GTGAGGACAGAG
Seq C2 exon
ATACAATGGAGAAGTCGGAGACATTGTGGTGGGGAGGATTACTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009245-4-3,5-3-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.029 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF143821=ECR1_N=PD(59.0=65.7)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGGAGAGAGTGAACAAGCTG
R:
TCAGTAATCCTCCCCACCACA
Band lengths:
93-105
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]