BtaALTD0008569-2/2 @ bosTau6
Alternative 5'ss
Gene
ENSBTAG00000010515 | FBXW5
Description
F-box and WD repeat domain containing 5 [Source:HGNC Symbol;Acc:HGNC:13613]
Coordinates
chr11:106289642-106290375:+
Coord C1 exon
chr11:106289642-106289789
Coord A exon
chr11:106289790-106290026
Coord C2 exon
chr11:106290228-106290375
Length
237 bp
Sequences
Splice sites
5' ss Seq
TCGGTGAGG
5' ss Score
8.99
3' ss Seq
CACCCCCGCCCTCCTTGCAGGCA
3' ss Score
11.3
Exon sequences
Seq C1 exon
CGGCTCTTCAAGATCCAGAACCTCAACGCCAGCACCATCCGCACCGTCATGGTGGCCGACTGCAGCCGCTTCGACAGCCCCGACCTCCTGCTGGACGCCGGCGCCCCCGGCACAGACTCCAGCCGCGTCTTCGACCTGGGCAGCGATG
Seq A exon
GCGAGGATGAGGAGAGCGACCCGGGTCCGGCCCGCGCCAAGGGCCTGCGGCGCCTCCTGGACGGGTTCCTGGAGGGCCGGGCACAGCCCCCGCTGCCGGAGAGCACGCTGGAGACTAAGGTGGCCAAGCTGCTGGCCCAGGGCCACACCAAGCCCCCGGAGCAGGGCAGGGCCGCCGCCGGGAACAAGCTCCTCATCTTCACCACCGGCTGCCTCACCTACTCACCGCACCAGATCG
Seq C2 exon
GCATCAAGCAGATCTTACCGCACCAGATGACCACAGCCGGGCCCGTTCTGGGCGAGGGCCGGGGCTCCGACGCCTTCTTCGATGCGCTGGACCACGTCATCGACGTGCACGGACATATCATCGGCATGGGCCTGTCCCCCGACAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010515-9-16,10-16-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.371 A=NA C2=0.120
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGCTCTTCAAGATCCAGAACC
R:
CTGTTGTCGGGGGACAGGC
Band lengths:
296-533
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development