MmuALTD0005480-5/6 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000015095 | Fbxw5
Description
F-box and WD-40 domain protein 5 [Source:MGI Symbol;Acc:MGI:1354731]
Coordinates
chr2:25503437-25504327:+
Coord C1 exon
chr2:25503437-25503608
Coord A exon
chr2:25503609-25503866
Coord C2 exon
chr2:25504180-25504327
Length
258 bp
Sequences
Splice sites
5' ss Seq
TCGGTAATG
5' ss Score
6.42
3' ss Seq
TCACCCTGGTCTCCATGCAGGCA
3' ss Score
9.53
Exon sequences
Seq C1 exon
GATGTGGAGTCAGAGAATGTCAACGTGGTAAAGCGGCTCTTTAAGATCCAGAACCTCAATGCCAGCACCATCCGCACAGTGATGGTGGCTGACTGTAGCCGCTTTGATAGCCCGGACCTCCTGCTGGATGCTAGCGACCAGGCTGGGCTCCCCTGCCGAGTCTTTGACCTAG
Seq A exon
GTGGGGACACTGAAGAAGAGGCCACTGACCCAGGTTTGCACACTTCTGGTTCTGACCACGTCAAGAAAGGTTTACGGCGTGTGTTTGATAGCGTCTTGGATGGACACGGACAGCTATCGGATTGTGCACTGGAGACCAAGGTGGCTGAGCTGCTGGCCCAGGGCCACACCAAGCCTCCAGAGTGCAATGACGCTGACACCAGGAATAAGTACCTCATCTTCACCACTGGCTGCCTCACGTACTCACCGCATCAGATCG
Seq C2 exon
GCATCAAGCAGATCCTGCCACACCAGATGACAACTGCAGGGCCCGTGCTGGGCGAGGGCCGGGGCTCTGATGCCTTCTTTGATGCCCTGGACCATGTCATTGATGTGCATGGGCACATCATTGGCATGGGCCTGTCTCCTGATAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000015095-11-20,12-20,15-20,16-20,17-20,18-20-5/6
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.131 A=NA C2=0.110
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACGTGGTAAAGCGGCTCTTT
R:
TGTTATCAGGAGACAGGCCCA
Band lengths:
298-556
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types