RnoALTD0011482-2/2 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000028674 | Fbxw5
Description
F-box and WD repeat domain containing 5 [Source:RGD Symbol;Acc:1305661]
Coordinates
chr3:2729488-2730111:+
Coord C1 exon
chr3:2729488-2729634
Coord A exon
chr3:2729635-2729654
Coord C2 exon
chr3:2729964-2730111
Length
20 bp
Sequences
Splice sites
5' ss Seq
TCGGTAATG
5' ss Score
6.42
3' ss Seq
TCACCCTGCTCTCCACGCAGGCA
3' ss Score
10.66
Exon sequences
Seq C1 exon
CGTCCTGGATGGACATGGACAGCTGTCAGATTGTGCACTGGAGACCAAGGTGGCTGAGCTGCTGGCCCAGGGCCACACCAAGCCCCCAGAGTGTCCTGACGCTGACAGCAGGAACAAGTACCTCATCTTCACCACTGGCTGCCTCAC
Seq A exon
GTACTCACCTCATCAGATCG
Seq C2 exon
GCATCAAGCAGATCCTGCCGCACCAGATGACAACTGCAGGGCCCGTGCTGGGCGAGGGCCGGGGCTCTGATGCCTTCTTTGATGCCCTGGACCATGTCATTGATGTGCATGGGCACATCATTGGCATGGGCCTGTCTCCCGATAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000028674-10-17,11-17-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.160 A=NA C2=0.100
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTCATCTTCACCACTGGCT
R:
CCAGGGCATCAAAGAAGGCAT
Band lengths:
118-138
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]