BtaALTD0012599-1/2 @ bosTau6
Alternative 5'ss
Gene
ENSBTAG00000021024 | MACF1
Description
microtubule-actin crosslinking factor 1 [Source:HGNC Symbol;Acc:HGNC:13664]
Coordinates
chr3:107291970-107294574:-
Coord C1 exon
chr3:107294347-107294574
Coord A exon
NA
Coord C2 exon
chr3:107291970-107292119
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAAG
5' ss Score
2.98
3' ss Seq
CCCCTTTGCATTTTAATTAGACC
3' ss Score
6.13
Exon sequences
Seq C1 exon
GACTTGAAACAGCCCATGGCTGAGAGGAAATCCCAACTGGATGCACTTGCCTTTGATATTCAGTTCTTGATCTCCGAGCACGCCCAGGACTTGTCTCCTCAGCAGAACCGGCAGATGCTGAGGCTTCTGAATGAAGTGCAGAGGTCCTTCCAGGACCTTGTAGAAGAGACTACAGCTCAGGGGAATGCCTTGCGGGACCGTCTTCAACAGATGGAGCAGGCTGCCCAG
Seq A exon
NA
Seq C2 exon
ACCCTGCAGAAACAACAAAATACCTGTCACCAGAAACTGGAGGATCTTTGCAGCTGGGTGGGACAGGCAGAAAGAGCATTGGCTGGCCATCAGGGTAGAGCCACCCAGCAGGATCTCTCTGCTTTGCAGAAGAACCAAAGTGACCTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021024-49-49,50-49-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.256 A=NA C2=0.520
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=PD(58.0=83.3)
A:
NA
C2:
PF0043516=Spectrin=PU(40.7=92.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGGACCGTCTTCAACAGATG
R:
CCAGCTGCAAAGATCCTCCAG
Band lengths:
93-99
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development