MmuALTD0008073-1/2 @ mm9
Alternative 5'ss
Gene
ENSMUSG00000028649 | Macf1
Description
microtubule-actin crosslinking factor 1 [Source:MGI Symbol;Acc:MGI:108559]
Coordinates
chr4:123138328-123141014:-
Coord C1 exon
chr4:123140787-123141014
Coord A exon
NA
Coord C2 exon
chr4:123138328-123138477
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAAG
5' ss Score
2.98
3' ss Seq
CTCCTCTGCATTTTAATTAGACT
3' ss Score
5.54
Exon sequences
Seq C1 exon
GATATGAAACAATCTATGGCTGAAAGGAAATCTCAGCTGGATGCCCTTGCTTTGGATATTCAGCTCTTTATATCTGAGCACCCACAGGATCTGTCTCTTCAGCAGAATCAGGAGATGCTGCAGTTTCTGAGTGAATTACAGAGGTCCTTCCAGGGCCTTGTGGAACACACTGCAGCTCAGAAAGATGTGGTGCAGGGCCATCTTCAGCAAGTCCAGCAAGAAGTTCAG
Seq A exon
NA
Seq C2 exon
ACTCTGCAGAAACAACAAGACACCTGCCATAAGAAGCTGGAGGATCTTTGCAACTGGGTGGGACAGGCAGAAAGAGCACTGGAGAGGCACCAGGGCGGAGCCTCTCGGCAAGAGCTCCCTGCTCTGCAGCAGAACCAAAGTGACTTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028649-51-52,52-52-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.128 A=NA C2=0.517
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0043516=Spectrin=PU(40.7=92.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCATCTTCAGCAAGTCCAG
R:
GTCCCACCCAGTTGCAAAGAT
Band lengths:
97-103
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: