BtaALTD0013463-1/2 @ bosTau6
Alternative 5'ss
Gene
ENSBTAG00000044074 | MLLT10
Description
myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10 [Source:HGNC Symbol;Acc:HGNC:16063]
Coordinates
chr13:23234692-23236618:+
Coord C1 exon
chr13:23234692-23234901
Coord A exon
NA
Coord C2 exon
chr13:23236574-23236618
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTAACA
5' ss Score
8.92
3' ss Seq
TTTGTTTGTTTTAACCTCAGAGA
3' ss Score
7.22
Exon sequences
Seq C1 exon
GAGCAGCACCAGGCACTTCTATACCAGCTGGTGCAACAGCACCACCAGCAGCAGCAGCAGCACCACCAGCCTGATCTCCAGCAGCTGCAGATCCCGGGACCCACGCAGATACCCATCAACAACCTGCTTGCAGGCACGCAGGCGCCTCCACTTCACCCAGCCACCACCAACCCGTTCCTCACCATCCATGGTGATAATGCAAGTCAGAAG
Seq A exon
NA
Seq C2 exon
AGACTTAGTGATAAAAGTGGGCCTGTTGCTCAAGAGAAAAGTTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000044074-68-60,69-60-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.847 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACTTCACCCAGCCACCAC
R:
TTGAGCAACAGGCCCACTTTT
Band lengths:
95-101
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development