BtaEX0022528 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000044074 | MLLT10
Description
myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10 [Source:HGNC Symbol;Acc:HGNC:16063]
Coordinates
chr13:23234692-23236618:+
Coord C1 exon
chr13:23234692-23234907
Coord A exon
chr13:23235563-23235688
Coord C2 exon
chr13:23236574-23236618
Length
126 bp
Sequences
Splice sites
3' ss Seq
TAATTCTCCCCTTCAATCAGGTC
3' ss Score
8.12
5' ss Seq
GAGGTGGGA
5' ss Score
4.3
Exon sequences
Seq C1 exon
GAGCAGCACCAGGCACTTCTATACCAGCTGGTGCAACAGCACCACCAGCAGCAGCAGCAGCACCACCAGCCTGATCTCCAGCAGCTGCAGATCCCGGGACCCACGCAGATACCCATCAACAACCTGCTTGCAGGCACGCAGGCGCCTCCACTTCACCCAGCCACCACCAACCCGTTCCTCACCATCCATGGTGATAATGCAAGTCAGAAGGTAACA
Seq A exon
GTCTACTTTACTGGAGTATAAATGTTTCCCTAAATTCCAGTTGAGGGCAGAACCCTGTTAGAGGAAGGATATTGGGATATAGAATGGAGACTGGACACCAGGAAAAGGAAGAAGGGAAAGAATGAG
Seq C2 exon
AGACTTAGTGATAAAAGTGGGCCTGTTGCTCAAGAGAAAAGTTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000044074_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.847 A=0.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSBTAT00000061645fB4341
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCAGGCACTTCTATACCAGCT
R:
TTGAGCAACAGGCCCACTTTT
Band lengths:
242-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development