BtaINT0093658 @ bosTau6
Intron Retention
Gene
ENSBTAG00000044074 | MLLT10
Description
myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10 [Source:HGNC Symbol;Acc:HGNC:16063]
Coordinates
chr13:23234692-23236618:+
Coord C1 exon
chr13:23234692-23234907
Coord A exon
chr13:23234908-23236573
Coord C2 exon
chr13:23236574-23236618
Length
1666 bp
Sequences
Splice sites
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
3' ss Seq
TTTGTTTGTTTTAACCTCAGAGA
3' ss Score
7.22
Exon sequences
Seq C1 exon
GAGCAGCACCAGGCACTTCTATACCAGCTGGTGCAACAGCACCACCAGCAGCAGCAGCAGCACCACCAGCCTGATCTCCAGCAGCTGCAGATCCCGGGACCCACGCAGATACCCATCAACAACCTGCTTGCAGGCACGCAGGCGCCTCCACTTCACCCAGCCACCACCAACCCGTTCCTCACCATCCATGGTGATAATGCAAGTCAGAAGGTAACA
Seq A exon
GTAAGTATCTGTGTTTTGTTACAGCTAGTGAAATCACAGAGCCAATTTTAGTGATTAGAGATGACTGTCCGGCCCTCCCCTTCTTCCCTTCCTCCCTCTTTCCTTCTCTCTCTTTTAAAATATATTATCCCCCAGATAATTTCTTCTTAAAACCAGTTGTTTCAGCAGCTGGATATTGTAAACACAAAGGACCTAAGCCAATTTATATATCCCCTAAGTATATCAGTTTGAATTTGCACATAAGGTTGGAAGGCTGTTTTATAATTCAGCAGTTTTTCAAAATGAAAATGTTTTGGTATAGTAAGTGATATGGGACAGTCCAATCAAAAGATAAGTAGTTGGTATTTTGAGAATCTTTGTTTAAGTGATTTGTTTAACTATAGAAATAGTCTAGATAATTTAGGATTATTTTTATTGTTTTGCTCAGATGTGCTAAAACTGAATTATACTTACAGTAAAATTAATATATAAACTTTAGGGCAATCTAGTTATTCTACTGAATAGAAAGTAAATCATAATCACAATTGTAATGAAATTTAAATTTTTAATCTTATGTAAATGATAGCAGAACAATGGGTGCAGGAACAGTATCCTTATGTGTACAGTGCACACATGATAAGGCTGTTTCTTTCTATTAATTCTCCCCTTCAATCAGGTCTACTTTACTGGAGTATAAATGTTTCCCTAAATTCCAGTTGAGGGCAGAACCCTGTTAGAGGAAGGATATTGGGATATAGAATGGAGACTGGACACCAGGAAAAGGAAGAAGGGAAAGAATGAGGTGGGAGACTTGGCAAAAACGGTGTTCAAAGTCACAATGTTTGCTCTTTCCCATTACTTTGAAACCTTGCTCTTTACTGTGCTTTTAGTTTTCAGAAGCTTTAGTTTGTATTTAGTAACAAGAATTAGTTCAAAATAAAGTATACTGGTTTTCATTACCTCTTCAATGCTTTTTGTTTACCCTACTGTTCCTCTGACTTCTTGATTGTGAATACTGTCATTATCATTATCACAAACCTAGTTTTGCAGACATGGAAATTTCATTGATTCTGTACTGATTTAGATTTTTTTTTTTAACCATTTTTTGCTCTAAAGTTTTTTCTTGTGTTAAAATCAAAAAGGTTATACAATATGAAATGTATTTTACAAGGCTGGGAAGTAATATGAGTATCCTGCTGTGTGACAGGTGTCTTTATTAGAGACAGTAGTATATATGGTTCCAGTCTTTAAACTATTAAAAAACCTGTTTTTTAAAATAGGGAGATTCAAAGAGGTTAAAGTTCAAAGGACAGATAGCATGTATGTGGGATCAGAACCCATGACTTCCTTACTTGTTCATTTTCCACACGACTGTGTTACTACTACCGTGGAAAAGTCCGTTTTGGAGGGATGATTTCTACGTTTCATTCCTTATTAGTCCTGCCTCAGAGGAGTACTTCTGTCTTTGTGTACTGCTGAATTTAATATAAAGCAACTAAATGTTTACCAGTATTTTCATGTCCTTACATTATGCTGAAAAGTAGCCATGCTGACTTGTAGAAAAAAGGAATAACCATATATACTACCTTTTATCTCAGTTACAATTTCAGTTAAGAGGAGATTGTTTCAAGTGTGGGCCAAAAATTTCTTTAGCTAATACACTTGATTTTGTTTGTTTTAACCTCAG
Seq C2 exon
AGACTTAGTGATAAAAGTGGGCCTGTTGCTCAAGAGAAAAGTTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000044074:ENSBTAT00000061645:41
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.847 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACCAGGCACTTCTATACCA
R:
CAACTTTTCTCTTGAGCAACAGGC
Band lengths:
255-1921
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development