BtaALTD0017027-1/2 @ bosTau6
Alternative 5'ss
Gene
ENSBTAG00000024426 | PPP1R9A
Description
protein phosphatase 1, regulatory subunit 9A [Source:HGNC Symbol;Acc:HGNC:14946]
Coordinates
chr4:12038441-12042367:+
Coord C1 exon
chr4:12038441-12038541
Coord A exon
NA
Coord C2 exon
chr4:12040757-12042367
Length
0 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
3' ss Seq
TTCATTCTTTTCTGTTACAGATG
3' ss Score
11.75
Exon sequences
Seq C1 exon
CGCCCTCCGTTGGCCGCCAGAGGCTCCCTCTCTCCCTCTCCTGGGATTTTGCTGCCGGGCTCCCTCTCTCTGCGGCCCTAGAGTTAATCCCATCAGCCGAG
Seq A exon
NA
Seq C2 exon
ATGAACCTGTAGTCTTGCTTTGAAAAAGCCATTTTGTGTAACTCTTGACTGAATAATTTCCTAATACACCTGTTGGGAGGATCACTGACACAGTATGCCATTTGAGAGGTACTTTTTCTTGACCAGATACTGGTGATTAGAGAAGAGAGGTGTTTTGTTTTTTTGGTTTTTTTACCTGATCATTATGAACATTGGCTTTTCACCCCTGAAGTAAAAATGTTGAAAACCGAGTCTTCGGGTGAACGTACCACGCTCAGAAGTGCCTCTCCTCACAGGAATGCATATAGAACTGAGTTCCAGGCATTGAAAAGTACCTTTGACAAACCCAAGTCAGATGGGGAACAAAAAACAAAAGAAGGTGAGGGCTCCCAGCAGAGCAGGGGGAGGAAGTATGGCTCCAATGTCAACAGAATTAAAAACCTATTTATGCAGATGGGTATGGAACCCAGTGAGAATGCCGCAGTCATGGCCAGAACAAGGGGCAGAGGTGGACCTTCATC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000024426-1-0,2-0-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.925
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTCCTGGGATTTTGCTGCC
R:
TCCTGTGAGGAGAGGCACTTC
Band lengths:
343-787
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development