BtaEX0028236 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000024426 | PPP1R9A
Description
protein phosphatase 1, regulatory subunit 9A [Source:HGNC Symbol;Acc:HGNC:14946]
Coordinates
chr4:12038499-12221628:+
Coord C1 exon
chr4:12038499-12038541
Coord A exon
chr4:12040757-12042367
Coord C2 exon
chr4:12221496-12221628
Length
1611 bp
Sequences
Splice sites
3' ss Seq
TTCATTCTTTTCTGTTACAGATG
3' ss Score
11.75
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
GCTCCCTCTCTCTGCGGCCCTAGAGTTAATCCCATCAGCCGAG
Seq A exon
ATGAACCTGTAGTCTTGCTTTGAAAAAGCCATTTTGTGTAACTCTTGACTGAATAATTTCCTAATACACCTGTTGGGAGGATCACTGACACAGTATGCCATTTGAGAGGTACTTTTTCTTGACCAGATACTGGTGATTAGAGAAGAGAGGTGTTTTGTTTTTTTGGTTTTTTTACCTGATCATTATGAACATTGGCTTTTCACCCCTGAAGTAAAAATGTTGAAAACCGAGTCTTCGGGTGAACGTACCACGCTCAGAAGTGCCTCTCCTCACAGGAATGCATATAGAACTGAGTTCCAGGCATTGAAAAGTACCTTTGACAAACCCAAGTCAGATGGGGAACAAAAAACAAAAGAAGGTGAGGGCTCCCAGCAGAGCAGGGGGAGGAAGTATGGCTCCAATGTCAACAGAATTAAAAACCTATTTATGCAGATGGGTATGGAACCCAGTGAGAATGCCGCAGTCATGGCCAGAACAAGGGGCAGAGGTGGACCTTCATCCCCGCAGAGGCGAATGAAGCCCAGAGAATTTCTGGAAAAAACAGATGGCTCGGTTGTTAAGTTGGAGTCCTCTGTTTCAGAACGAATTAGTAGATTTGACACAATGTACGATGGCCCTTCATATTCTAAGTTCACAGAAACTCGCAAGATGTTTGAGAGAAGTGTGCATGAGTCAGGACAAAACAACCGCTATTCCCCAAAGAAGGAGAAAGCTGGAGGGAGTGAACCTCAGGATGAATGGGGTGGTTCCAAGTCCAACCGAGGCAGTACTGATTCCTTGGACAGTCTTAGCTCCCGGACCGAGGCTGTCTCCCCAACTGTGAGTCAACTGAGTGCAGTATTTGAGAACACCGATTCCCCCAGTGCCATCATTTCCGAGAAGGCTGAGAACAACGAATACTCAGTGACTGGGCATTATCCCCTCAATTTACCATCTGTTACCGTTACAAATCTTGACACCTTTGGGCACCTTAAGGATTCTAATTCTTGGTCTCCTCCAAGCAAGCACAGTGACGATGCAGAGGATGCTCAGAAGCGTAGCACAAGCCCAGGACTAGAGGTGGCTTCGAAAAGTACCTCTCTAGCTTCTGTGCCCAGTGAAGAGGCGCAGCAGAGCAAGGCAGCCGAGGACCCCGCATCTAACCGGGAGGCTCCCGGCAGAACTGACAGAGACACCCCTGAAGAACCTGGTGCTGAAAGCGAGGCAGTGCCAGAGCCTGAAATCCCTTCACCACAGAACGAACCTTCAGAAGACGCAGAAGCTCGTTTGGTGGAGAGTGAGGCAGCAATGCAACAGAGGAGAGAACTTGCAGGTGGTGATTTCACCTCTGCTGAGGTATCTAGGTTCACCTGTGAAAAGGAAGTATTTGAAGAGCCGCATCATTTTGGGAGCTCCCATGTTTACATGCACAGTGACTATAATGTGTATAGGGTGAGATCCAGGTATAATTCAGACTGGGGAGAGACAGGTACTGAACAGGAGGAGCAGGAAGATAGTGATGAAAACAATTACTGTCAGCCTGATGTGGAATGCTCAGAGATCGCTGGATTGCCAGAAGAAGAAGACATCCCGGCAAACAGGAAAATTAAGTTTAGTAGTGCTCCAATTAAG
Seq C2 exon
GTCTTCAGCACATACTCCAATGAAGATTATGACAGGAGGAATGATGAAGTTGACCCCGTGGCTGCTTCGGCTGAGTATGAACTTGAAAAACGTGTAGAAAAGCTGGAACTTTTCCCAGTGGAACTAGAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000024426_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion (Ref, Alt. ATG (<=10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.925 C2=0.267
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0059519=PDZ=PU(5.9=11.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development