MmuEX0036727 @ mm10
Exon Skipping
Gene
ENSMUSG00000032827 | Ppp1r9a
Description
protein phosphatase 1, regulatory (inhibitor) subunit 9A [Source:MGI Symbol;Acc:MGI:2442401]
Coordinates
chr6:4902917-5046068:+
Coord C1 exon
chr6:4902917-4903031
Coord A exon
chr6:4905226-4906844
Coord C2 exon
chr6:5045936-5046068
Length
1619 bp
Sequences
Splice sites
3' ss Seq
CTCATTCTTTTCTATTACAGATG
3' ss Score
10.86
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
GGGCCGGTGCCTTTCGCCCTTCGTTGGCCGCCAGAGGCTCCCTCTCTCCCTCTCCTGGGATTTCGCTGCTGGGCTCCCTCTCTTTGCGGCCCTAGAGTTAATCCCATCAGCCGAG
Seq A exon
ATGAACCTCTAGTCTTGCTTTGAAAAAAGCTATTTTGTGTAACTCTTGACTGTGAATACATTTCTAATACAGCCTTTGGAATCGTCACGGGACAAGTGTGCCATTTGAGCGGCCCTGTGCCTGGTCAGACACTGGGGATTGAGAAGAGAGGTCTGTTTGGCTTTTTGGTTGTTTTTCCCAGTGACCATTATGAGCATTGGCTTTTCACCCTTGAAGTAAACATGTTGAAGGCGGAATCTTCAGGGGAGCGGACCACTCTCAGAAGTGCCTCTCCTCACAGGAATGCGTACAGAACAGAGTTCCAGGCACTGAAAAGTACTTTTGACAAACCCAAGTCAGATGGGGAACAGAAAACGAAAGAAGGTGAGGGCTCCCAGCAGAGCAGAGGTAGAAAGTATGGCTCCAATGTCAACAGAATTAAAAATCTATTTATGCAGATGGGTATGGAACCCAGCGAGAATGCTGCTATCATTGCCAAAACCAGGGGGAAAGGTAGGCCCTCGTCCCCTCAGAGAAGAATGAAGCCCAAAGAGTTTGTGGAGAAAACGGATGGCTCAGTGGTTAAGTTGGAGTCCTCTGTCTCTGAACGAATCAGTAGATTTGACACAATGCATGATGGCCCTTCGTATGCTAAGTTCACGGAGACTCGAAAGATGTTTGAGAGAAGTGTGCATGAGTCAGGGCAAAACCATCGCTATTCCCCAAAGAAAGAGAAAGGTGGAGGGACTGAACCACAGGATGAGTGGGGTGGCTCCAAGTCCAACAGAGGCAGCAGTGATTCCTTGGACAGCCTGAGCCCCCGGACGGAAGCGGTCTCTCCTACTGTGAGTCAGCTGAGTGCTGTGTTTGAGAACAGTGAGCCTCCAGGTGCTCTCACTTCTGGGAAGGCTGAGAGCGCTGACTACTCGGTGACCGGGCACTACCCCCTCAATTTACCATCTGTTACCGTCACCAATCTGGATACCTTTGGCCGTCTCAAGGATTCTAATTCGAAGCCTCCATCAAACAAACAAGATACTGATACAGAGGATGCTCAGAAGAGCGATGCTGTGCCAGTACCGGAAGTGGCTCAGAAAGGTACCTCTTTAGCTTCATTGCCTAGTGAAGAGAGCCAGCTGAGCACGGAAGCCGAGGACGTCACAACAGCTCAACCAGAGGCTCTGGACAGCACTGATAAAGACAGTCCTGAGGAACCCTCTGCTGAAAACCAGGCAATGCCAAAGTCTCATATCCTTTCCCCACGGAACGAGCCGTTAGAAGATGCTGAAGCTAATGTGGTTGGGAGTGAGAGAGCTCAGCATCAGAAGAAAGACCTGACAGGTGGTGACCTAACCTCCCCTGATGCTTCTGCATCCAGCTGTGGAAGAGAAGTACCTGAAGACTCAAACAGTTTTGAGAGTTCCCACGTATACATGCATAGTGACTATAACGTGTATAGGGTGAGATCCAGGTATAACTCAGACTGGGGAGAGACAGGCACGGAGCAAGATGAGGAGGAAGACAGTGACGAGAACAATTATTACCAGCCTGATATGGAATACTCGGAGATAGTTGGCTTGCCGGAAGAAGAAGAAATCCCAGCAAATAGGAAAATTAAGTTTAGTTGTGCTCCGATTAAG
Seq C2 exon
GTTTTCAACACATACTCCAATGAAGACTATGACCGGAGAAATGACGACGTTGACCCTGTAGCCGCATCTGCTGAGTATGAGCTTGAAAAGCGAGTAGAAAAACTGGAACTTTTCCCAGTGGAACTGGAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032827_MULTIEX2-1/2=C1-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.936 C2=0.344
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0059519=PDZ=PU(5.9=11.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCCTTTCGCCCTTCGTT
R:
AAAAGTTCCAGTTTTTCTACTCGCT
Band lengths:
222-1841
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types