RnoEX0068927 @ rn6
Exon Skipping
Gene
ENSRNOG00000008869 | Ppp1r9a
Description
protein phosphatase 1, regulatory subunit 9A [Source:RGD Symbol;Acc:632280]
Coordinates
chr4:29976348-30133445:+
Coord C1 exon
chr4:29976348-29976995
Coord A exon
chr4:29978741-29980348
Coord C2 exon
chr4:30133313-30133445
Length
1608 bp
Sequences
Splice sites
3' ss Seq
CTCGTTCTTTTCTATTACAGATG
3' ss Score
11.22
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
TTTTCGCCCTTCGTTGGCCGCCAGAGGCTCCCTCTCTCCCTCTCCTGGGATTTCGCTGCTGGGCTCCCTCTCTCTGCGGCCCTAGAGTTAATCCCATCAGCCGAGGTGAGGCACCTGTTACCCCGGGGCCTTCCTCATCCCCACGACCTGTCCCCTAGTCCACCGGGCCTCGCGGGCCTCAGGGCCCAGCGTGGGGGCCCCGCACGTGGGCCGAGCGGCGTCCCAACCCCAGGCCGCAGGCGAGGGTGTTAGCGCTTCGGGTCCCCAGGCCGGGCCGCCATGGCTGGGGTTGGATGGGGGGAGGGAGCGCAGCGCGCGTTCCGGGGCCGCCCCGCGCGGGCAAGACGCGCGTGGGGGGCCGAGGCGCGAGTGCAGGCGTCCGCCGCGCGCGCCGCGCCGTGACGAGCGGGCGGAGGGCACACGGGCTGCGCCGAACCCTCACGGTCACGGGGGGCGGGGGGGAGCGCCGGAGGAGTCCGACCTCCCGCCCGGGCCGCTCG
Seq A exon
ATGAACCTCTAGAAAAGAGCTATTTTGTGTAACTCTTGACTGTGAGTAAATTTCTAATACACCCGTTGGAACCATCAGTGGACATTAGTGCCCTTTGAGAGGCCCTTTGCCTGGTCAAATACTGGGGATCAGGAAGAGAGGTCTTTTTGGTTTGTTGTTGTTTTTCCCCGTGATCATTATGAGCATTGGCTTTTCACCCTTGAAGTAAAAATGTTGAAAGCTGAATCTTCAGGTGAACGAACCACTCTCAGAAGTGCCTCTCCTCACAGGAATGCATACAGAACTGAGTTCCAGGCACTGAAAAGTACTTTTGACAAACCCAAACCTGATGGGGAACAGAAAACGAAAGAAGGTGAGGGCTCCCAGCAGAGTAGGGGTAGGAAGTATGGCTCCAATGTCAACAGAATTAAGAACCTGTTCATGCAGATGGGTATGGAACCCAACGAGAATGCTGCTATCATTGCCAAAACGAGAGGGAAAGGTAGGCCCTCATCCCCTCAGAAGAGGATGAAGCCCAAAGAATTTGTGGAGAAAACCGATGGCTCAGTGGTTAAACTGGAGTCCTCTGTCTCTGAACGGATTAGCAGATTTGACACAATGCACGATGGCCCTTCGTATGCTAAGTTCACAGAGACTCGAAAGATGTTTGAGAGAAGTGGGCATGAGTCAGGGCAAAATAATCGCCATTCCCCAAAGAAAGAGAAAGCGGGAGAGGCTGAGCCACAGGATGAGTGGGGTGGCTCCAAGTCCAATAGAGGCAGCAGTGATTCCTTGGACAGCCTGAGCCCTCGGACGGAGGCTGTCTCTCCAACTGTGAGCCAACTGAGTGCCGTGTTTGAGAACAGTGAGTCTCCAGGTGCCATCACTCCTGGGAAGGCTGAGAACAGCAACTACTCGGTGACTGGGCATTACCCCCTGAACTTACCATCTGTTACCGTAACCAATCTGGATACCTTTGGCCGTCTCAAGGATTCTAATTCAAGGCCTTCTTCAAACAAACAAGCTACCGACACAGAAGAGCCTGAGAAGAGTGAGGCTGTGCCAGTACCGGAAGTGGCTCAGAAAGGTACCTCTTTAGCTTCATTGCCTAGTGAAGAGAGACAGCTGAGCACGGAAGCTGAGGACGTCACAGCTCAACCAGACACTCCGGACAGCACTGATAAAGACAGTCCTGGAGAACCTTCTGCTGAAAGCCAGGCAATGCCCAAGTCTAACACCCTCTCCCGACCGAAGGAGCCGTTAGAAGATGCTGAAGCTAATGTGGTCGGGAGTGAGGCAGAGCAGCCACAGAGGAGAGACCTGACAGGTGGTGGTGACCTCACCTCCCCGGACGCGTCTGCTTCCAGCTGTGGGAAAGAAGTACCTGAAGACTCGAACAGTTTTGAGGGCTCCCATGTATACATGCATAGTGACTATAACGTGTATCGGGTGAGATCCAGGTATAACTCGGACTGGGGAGAGACGGGCACAGAGCAGGATGAGGGGGACGACAGCGATGAGAACAATTACTATCAGCCCGATATGGAGTACTCGGAAATTGTTGGCTTGCCGCAAGAGGAAGAAATCCCAGCAAATAGGAAAATTAAGTTTAGTTGTGCTCCGATTAAG
Seq C2 exon
GTTTTCAACACGTACTCCAATGAAGACTATGACAGGAGGAATGATGACGTTGACCCTGTGGCTGCATCTGCTGAGTACGAACTTGAAAAGCGAGTAGAAAAGCTGGAACTTTTCCCAGTGGAACTGGAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008869_MULTIEX1-1/2=C1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.942 C2=0.316
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0059519=PDZ=PU(5.9=11.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGAGGGTGTTAGCGCTTC
R:
TTCGTACTCAGCAGATGCAGC
Band lengths:
342-1950
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]