HsaEX6009071 @ hg19
Exon Skipping
Gene
ENSG00000158528 | PPP1R9A
Description
protein phosphatase 1, regulatory subunit 9A [Source:HGNC Symbol;Acc:14946]
Coordinates
chr7:94536949-94740703:+
Coord C1 exon
chr7:94536949-94537014
Coord A exon
chr7:94539210-94540820
Coord C2 exon
chr7:94740571-94740703
Length
1611 bp
Sequences
Splice sites
3' ss Seq
TTCATTCTTTTCTATTGCAGATG
3' ss Score
12.04
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
CTCTCCCGGGATTTTGCTGCCGGGCTCCCTCTCTCTGCGGCCCTAGAGTTAATCCCATCAGCCGAG
Seq A exon
ATGAACCTCTAGTCTTGCTTTGAAAAAATCATTCTGTGTAACTCTTGACTGTGACTAAGTTCCTAATACACCTGTTGGGACGATCACTGACACCGTATACCATTTGAGAGGTACTTTTCTTGACCCAATACTGGTGATTAGAGAAGAGAGGTATCTTGGTTTTTGGTTTTTTTCTTTGATCATTATGAACATTGGCTTTTCACCCCTGAAGTGAAAATGTTGAAAACTGAGTCTTCAGGTGAACGAACCACTCTCAGAAGTGCCTCTCCTCACAGGAATGCATATCGAACTGAGTTTCAGGCACTGAAAAGTACCTTTGACAAACCCAAGTCAGATGGGGAACAAAAAACAAAAGAAGGTGAGGGCTCCCAGCAGAGCAGGGGGAGGAAATATGGCTCCAATGTCAACAGAATTAAAAACCTATTTATGCAGATGGGTATGGAACCCAACGAGAATGCTGCAGTCATTGCCAAAACAAGGGGGAAAGGTGGACATTCATCTCCTCAGAGAAGAATGAAGCCCAAAGAATTTCTGGAAAAAACAGATGGCTCAGTTGTTAAGTTGGAGTCTTCTGTTTCTGAACGAATTAGTAGATTTGACACTATGTACGATGGCCCTTCATATTCCAAGTTCACTGAGACTCGAAAGATGTTTGAGAGAAGTGTGCATGAATCAGGACAGAACAACCGCTATTCCCCAAAGAAAGAGAAAGCTGGAGGGAGTGAACCTCAGGATGAATGGGGAGGTTCCAAGTCCAACAGAGGCAGTACTGATTCCTTGGACAGCCTTAGCTCCCGAACTGAGGCTGTCTCCCCAACTGTGAGTCAACTGAGTGCAGTATTTGAGAACACTGATTCTCCCAGTGCCATCATTTCTGAGAAGGCTGAAAACAATGAATACTCAGTGACTGGGCATTATCCCTTGAATTTACCATCTGTTACTGTTACAAATCTTGACACATTTGGTCACCTGAAGGATTCTAATTCCTGGCCTCCTTCAAACAAGCGAGGTGTTGATACAGAGGATGCTCACAAGAGTAATGCAACTCCAGTACCAGAAGTGGCTTCTAAAAGTACCTCTCTAGCTTCGATACCTGGTGAAGAGATCCAGCAGAGCAAGGAACCCGAGGACTCCACATCTAATCAACAGACTCCCGACAGCATTGACAAAGATGGTCCTGAAGAACCTTGTGCTGAAAGTAAGGCAATGCCAAAGTCCGAAATCCCTTCACCACAAAGCCAACTGTTAGAAGATGCTGAAGCTAATTTGGTTGGAAGGGAGGCAGCAAAGCAACAGAGGAAAGAACTTGCAGGTGGTGATTTCACCTCTCCTGATGCTTCTGCATCCAGTTGTGGAAAAGAAGTACCTGAAGATTCAAATAATTTTGATGGTTCCCATGTGTACATGCACAGTGACTATAATGTGTATAGGGTGAGATCCAGGTATAATTCAGACTGGGGAGAGACAGGCACTGAGCAGGATGAGGAGGAAGATAGTGATGAGAACAGTTACTATCAGCCTGATATGGAGTACTCGGAAATTGTTGGATTGCCAGAAGAAGAAGAAATCCCAGCAAATAGGAAAATTAAGTTTAGTAGTGCTCCTATTAAG
Seq C2 exon
GTTTTCAACACATACTCCAATGAAGACTATGACAGGAGAAATGACGAAGTTGACCCTGTGGCTGCTTCAGCTGAGTATGAACTTGAAAAACGTGTAGAAAAGCTGGAACTTTTCCCAGTGGAGCTAGAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000158528-'1-6,'1-4,6-6=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion (Ref, Alt. ATG (<=10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.931 C2=0.400
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0059519=PDZ=PU(5.9=11.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTCCCGGGATTTTGCTGC
R:
CTTTCTCTAGCTCCACTGGGA
Band lengths:
199-1810
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)