DreEX6074061 @ danRer10
Exon Skipping
Gene
ENSDARG00000061304 | ppp1r9a
Description
protein phosphatase 1, regulatory subunit 9A [Source:ZFIN;Acc:ZDB-GENE-060503-660]
Coordinates
chr19:41488368-41526499:+
Coord C1 exon
chr19:41488368-41488561
Coord A exon
chr19:41493028-41494391
Coord C2 exon
chr19:41526367-41526499
Length
1364 bp
Sequences
Splice sites
3' ss Seq
ACCTTTTCAAACGTTTTCAGGAA
3' ss Score
10.03
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
Exon sequences
Seq C1 exon
GCGTAAAGCCCGGCTTGTATGTCATATTGTGTCAATTGTCTGGTAAAGTCCTGCATGGCAGCTTGATGCCAGTAGCTGAGCTGAATCAAAATGCTGCTCAATGTCATTCCCCTTCACTAAACCATTTAAAGCGAGGATATATTTATATCTAATATAACATATATTTAGATTACAACAACAAGAAGAAGGCGTAG
Seq A exon
GAATCCCCAACAAAATGTGATTGCACCCAAGGAGGAACAGCCTGAAGGAATGCTGATGTATCTTTGAGAAGCCCTCCATTGTCGAGGCTAAGATGATGAAGACGGAGGCCTCGGCAGAGAGGAACACCCTGAGGAGCGCGTCCCCGCACAGAAACGCCTACCGGGCTGAGTTCCAGGCGCTAAAGAAGGCGTTCGATCAACCGAGGCAGGATGGAGACCACAAACACAAAGACCCCGAGGGGGTCCGACAGCCTCGAGGGCGTCAATACGGAGCCCACGTCAGTCGCATTAAAAATATGTTTATGCAAATGGGGACAGAAAGCACCGGGTCAAACCGACAAGCCAGGGACGAGACTTCCCCACAGAAACTCAACAAGCCGACAAACTTCATCAACAGAACAGACGGCTCGGTGGTCAAGTTCCAGCAAGGCACTGGAGAGCGGACGTCCGGTGGCCATCACAACTCGAAGTTCTCTGAAACAAGGAAACTTTTCGAGCAGAGCTCCAGAGACGCCTCACAGTCGCCGGTGTACTCCTATGGTCGGGATAAAAGAGGTTCTCATGAGCATCTGGACGACTGGAGGGGAGCGCGTTCAAACAGAGGCAGCACAGACTCTTTGGACAGTCTTTGCTCCAGGACGGAGGCTTCTTCTCCCACTGTGAGCCAACTCAGCGCTGTGTTTGAAAATATAGACCAGCAGGGCTCCGGCGCTACCTTCAGAAGAAGCCATGGAAGTGGACGAGGGTTGTACTCTCCTGATGGCTTACAGAAACACGGGGAGGCCAGTGAGGATGACACCAGTGCTCGACAGTCTCCGTCAAGTGGTTTTTACAGGACGCGAGTGGGCAGCAAGCACAATCTTCCGGTTTCTTCATCTTCGGAAGATCTTCTCAGTCCTAGTCCTCTATCGGAGGCGAAAACTGATGAGAAGAAGAGTCAGGAGATGATTGAAGAATCCGGTGAACTGCAGCTTAAGGATGAGATTAACTCAACTAAGGCCTTGAATGGTTCTTCGACTCCGGCTGAAGTCAATGACGCTGCAGGACATTTGCTTGAGGCTACCAGAGTCCACGAGGACACGGACGGTCATGTGAAAGAGGAGTCTAGGCGGATTACAGAGGATCAGATTGAAGAAACCAATGAGGAATACTGTGGTAATGAGAGAGTTGTTTTCAATGCCGATGGAGATGCTTGCTACCAGGGCTGGGGCGAGAGCTGCACTGAACCAGAGGATGACCTATATGATGATGACCTTTCCTATGACCCAGGATCGGAAATTACGGAGATTCCTGGTCTTCCAGAAGAGGAAAAGGAGGATATTCCACAAAAACGGAAAATTCAATTCAGCTCTGCTCCCATAAAA
Seq C2 exon
GTGTTTAAAACCTACTGCAATGAAGATTACGACCGCAGGAATGAAGAGGTGGACCCAGTGGCGTCCTCAGCTGAGTATGAGCTGGAGAAACGGGTGGAGAAGCTGGAACTTCTCCCTGTGGAACTGGAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061304-'0-2,'0-0,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion (Ref, Alt. ATG (<=10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.950 C2=0.244
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0059519=PDZ=PU(7.0=13.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCCGGCTTGTATGTCATAT
R:
TTTCCAGTTCCACAGGGAGAAG
Band lengths:
318-1682
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]