BtaALTD0019545-3/8 @ bosTau6
Alternative 5'ss
Gene
ENSBTAG00000000098 | SETDB1
Description
SET domain, bifurcated 1 [Source:HGNC Symbol;Acc:HGNC:10761]
Coordinates
chr3:19874637-19875984:-
Coord C1 exon
chr3:19875884-19875984
Coord A exon
chr3:19875864-19875883
Coord C2 exon
chr3:19874637-19874907
Length
20 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGA
5' ss Score
7.54
3' ss Seq
TAGTTTCCTGCTCCATGTAGAGG
3' ss Score
4.12
Exon sequences
Seq C1 exon
CCCCCCCCGCCTTCCCCTTCCCTCCCTCACGCTTCTTCCCCTCCCCCTGCTCCCTTTTCTGTTTGGTTTCGTTCTTTCCTACCGAGGCCGACCCCTGCGTC
Seq A exon
GTGAGTCTGGGGTCTGGCTG
Seq C2 exon
AGGACAGCAATATGTCCTCCCTCCCTGGGTGCCTTGGTTTGGCAGCTGCAACAGCAGCAGTGGAGTCTGAAGAAATTGCAGAGCTGCAACAGTCCGTGGTTGAGGAGCTGGGCATCTCAATGGAGGAGCTTCGACAGTTCATTGATGAAGAACTGGAAAAGATGGACTGTGTACAGCAGCGCAAGAAGCAACTAGCAGAGTTGGAGACTTGGGTAATACAAAAGGAATCTGAGGTGGCCCATGTTGACCAACTCTTTGATGATGCATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000098-2-1,3-1,4-1,5-1,6-1,7-1,8-1,9-1-3/8
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTTTCCTACCGAGGCCGAC
R:
CTTCAGACTCCACTGCTGCTG
Band lengths:
102-122
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development