BtaINT0131648 @ bosTau6
Intron Retention
Gene
ENSBTAG00000000098 | SETDB1
Description
SET domain, bifurcated 1 [Source:HGNC Symbol;Acc:HGNC:10761]
Coordinates
chr3:19874637-19875888:-
Coord C1 exon
chr3:19875805-19875888
Coord A exon
chr3:19874908-19875804
Coord C2 exon
chr3:19874637-19874907
Length
897 bp
Sequences
Splice sites
5' ss Seq
GAGGTATTC
5' ss Score
6.35
3' ss Seq
TAGTTTCCTGCTCCATGTAGAGG
3' ss Score
4.12
Exon sequences
Seq C1 exon
GCGTCGTGAGTCTGGGGTCTGGCTGGTGAGAAAGAGCCATCTTTAGCTGGAAGCAGGGAGGTGTGGGAAATACTGTTAATTGAG
Seq A exon
GTATTCGGAGACCAAGGGCTTGTATGGAATGTTTTGTTTGTTGTAAGAGGTCGGGCGAGGGTGGGAAGGAGGTCTTTCCCGGAGACAAGCGGGGACGGTGTTGAACTGGATTTGCGGGTGGGTGGGACGCACCCCTAAAATGGGTAGCGCGGGGGTGGGGCGGCGTGTGGTCAAAAGAGAAATGGAGACAGTGAGAACTGGCACTGGGGTCGCATGGCGTTCTGGCTTCAGTTTTGCTTTAACCGTTTGATCGAAAAAGCAGTTAACACCAGTGTGTGTTGTATGTGCGAGTATTTGAAGTGTCGATTTAGGTAGCCACCTTTTATTCCCATATTATTTTATTTCATTTTACTTTGGGAAAACCTTTTGTGCTGCAAGCTTTTGTGTACTTAAGTGTCTTTCAACGTGAAAACAAAGTGATGTAAGGAGAAAAGTAATTAAAGAGAAAACAACGAATTAGGGAGTTGTAAACCAAACCTTCCCCTCCAGGTGGGGGTATTTGCTCAAATTAGCATAGCGTGTAAAGATTTATCTCATTAGTCAAGGAACACAGGTCACAGAAATATCTACCTCAATAAATTGCTTCTTTTCAGTTTCCTAAAACATTATTTTTGGTAGCTCCTTGTGTGATATATGTCCTCCGTGCCCTGTCAAACTTTTTCATTTTACTCAGGCCTATAGTCTACAGCCTATAGGAGATGAGAACTCTACAAAATCTCAGCTTCAGACACTGGAGAACTCGGGGGTTGGGGGTGGGGGGTGGACATGGACTCAAACCTAACTACGTATATCTGAGTAACAAGTAGCTGAGTAGGAATGAGTTTTATTAGGGGACTGAAATTCTCTATTGTGGTTATGATCACTCCAAAAGTAATTTTAGTTTCCTGCTCCATGTAG
Seq C2 exon
AGGACAGCAATATGTCCTCCCTCCCTGGGTGCCTTGGTTTGGCAGCTGCAACAGCAGCAGTGGAGTCTGAAGAAATTGCAGAGCTGCAACAGTCCGTGGTTGAGGAGCTGGGCATCTCAATGGAGGAGCTTCGACAGTTCATTGATGAAGAACTGGAAAAGATGGACTGTGTACAGCAGCGCAAGAAGCAACTAGCAGAGTTGGAGACTTGGGTAATACAAAAGGAATCTGAGGTGGCCCATGTTGACCAACTCTTTGATGATGCATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000098:ENSBTAT00000000107:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTCGTGAGTCTGGGGTCT
R:
TCAAAGAGTTGGTCAACATGGGC
Band lengths:
342-1239
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]