HsaINT0148361 @ hg38
Intron Retention
Gene
ENSG00000143379 | SETDB1
Description
SET domain bifurcated 1 [Source:HGNC Symbol;Acc:HGNC:10761]
Coordinates
chr1:150926339-150927974:+
Coord C1 exon
chr1:150926339-150926517
Coord A exon
chr1:150926518-150927703
Coord C2 exon
chr1:150927704-150927974
Length
1186 bp
Sequences
Splice sites
5' ss Seq
GAGGTGCGG
5' ss Score
6.79
3' ss Seq
TTGTTTTCTGTTCCATGCAGAGG
3' ss Score
9.18
Exon sequences
Seq C1 exon
GGCACTAAAGGTTTGCTTCCGGGCGTTTCTTTTGCTTCCCCTTCCCTCTTTCACGCTTCCTCCCCTCCCCCTCCTCCCTTATCCCTTCGCTTTCGCTCTTTTCCGTCGAGGCCGACCCCTGAGTTGTGAGTCTGGGGTCTGGTTGGTGAAAAAGAGCCCTTGAAGCTGGAAGACGGGAG
Seq A exon
GTGCGGGGAATACTGTTGAGTTATTTGGTGACCAAAGGCTTATCTGGGACGTTTTGTTTGTGGGAGGGGGTCGGGCGAGGGTGGGAAGGAAGTCTTCCCCAGAGGCGAACGGGGGCGGGGCTGAACTGGGTTTGCGAATGGGTAGGACGCACCCCTAGAATGGGTAGCACGGGGGTGGGCTGGTGTGTGGGCAGAGGAAAATGGAGGCGCTGAAAATCAGATTTTCTTTAACCGTTTGATTAAAAAAGCAGTTCACACGAATGTGTGAAGTATTTGGATTGTGGATATTAGGTACCCACGTTTTATTCCCAGGTTGCTTTACTTCTCTGTACTTTGGGGGAAACCTTTTTGCTGCAAGCTTTCGTGTGTTTGAATATCATAGACTTTTTAAAAAGTAAAATTCCACATGGAAGCAAAGTAATATAAGGGGAACAAGTAATGAAAGAGAAAACACTGAGTTAGTGAGTTCCAAATCAACTCCATCCCCAGGTGGGGTTTTGTTTAAATTAGGCATAGCATACAAAGATTTATCACATTAGTTAAGGAACACATATAGACCACAAAAATATCTTATAGATTGGTTCTCTTCAGTATCCCAAAAGATTATTTTTAAAGTTCGGTTTGTTTTGAGACAGGGTCTCACTTTGTCACCCAAGCTGGAATGCATGGCGCGAACATAGCTCACTACAGCAGCTACTCCTGGGCTCAAGCGATCCTCCCACTTCAGCCTCCTGAGTAGCTGGAACTAAAGGCGTGCACCACCACACGTGGCTAATTTTTGTATTTTTTTGTAAAGACGAGTCTTGCCATGTTGCCCAGGCTGGTCTTGAACTCCTGCCCTCAAGCGACCCTCCTGCCTCGGCCTCTAAAAGTGCTGAGATTACAGGTGTAAGCCACTGTGCCAGCCCAAAACATTATTTTCAGTAGCTCTCTACTGCTTAATGAATGTTCTCCATGCCGTCTCAAACTCTTAAATCTTTTTCAGGAGTGTTAGCGTACAGCAGAAGATAAGAACTCTTAAAAATCTCAGCATCAGATTCTGGAGAATAGGGAGGGAGAACATGGAATATTTGAATAGAATAACAGGCAGCAGAGTAGGAATTAGTTTTATTAGGGAACTGAAATTCTCTATTGATTGATTGTAGTTATAAGGACTCCAATTTAATTTGTTTTCTGTTCCATGCAG
Seq C2 exon
AGGACAAAAGCATGTCTTCCCTTCCTGGGTGCATTGGTTTGGATGCAGCAACAGCTACAGTGGAGTCTGAAGAGATTGCAGAGCTGCAACAGGCAGTGGTTGAGGAACTGGGTATCTCTATGGAGGAACTTCGGCATTTCATCGATGAGGAACTGGAGAAGATGGATTGTGTACAGCAACGCAAGAAGCAGCTAGCAGAGTTAGAGACATGGGTAATACAGAAAGAATCTGAGGTGGCTCACGTTGACCAACTCTTTGATGATGCATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000143379:ENST00000271640:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.003
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTCGCTCTTTTCCGTCGAGG
R:
AAGAGTTGGTCAACGTGAGCC
Band lengths:
345-1531
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains