MmuINT0142203 @ mm9
Intron Retention
Gene
ENSMUSG00000015697 | Setdb1
Description
SET domain, bifurcated 1 [Source:MGI Symbol;Acc:MGI:1934229]
Coordinates
chr3:95159856-95161124:-
Coord C1 exon
chr3:95160949-95161124
Coord A exon
chr3:95160125-95160948
Coord C2 exon
chr3:95159856-95160124
Length
824 bp
Sequences
Splice sites
5' ss Seq
CTGGTGCGA
5' ss Score
5.2
3' ss Seq
TTCTTGTTCATCCTGCACAGGGC
3' ss Score
8.25
Exon sequences
Seq C1 exon
TGTTTCCCCTCCCCCGCCGTCTCTCCTTCAGTTTGCCTGGGTTTGGCAAGGCGGAGCCCTGGAGTAAAACCTGGGGTCGGGGTTGTGAGACGCGGCCCTTGCGGTCGGGCGCCAGAGTTGTGGGGAGGACGGACTGAGGTGCGCTGAGGCCGAGGTGGACCTGGGAGGCTTGGCTG
Seq A exon
GTGCGAGGCTGGGGCTGTGTGTGGGAACTTGGCGGGAGAGGAGCGAGCCGGGGGCGGGCGGGCCTGAGGCGGCGGCTGCGGGTGGGCGCGAGGCGGTGCGTGGGTGAGGCGGTGCGTCGATGAGGCGCGGGAAAGCAGGAGGGCGGCAGGCTGGAGGCTGCTGCGGTTCTGCGTGGCCCGGGCGGCCAAGCGCCTGTGCGCGTTATTCCGAGTGTGGCTGCTGGGTGGTCGCCATGGCTTCAAGCTTTTGCTCTGATCACGTAGGGATGTCCGACTTTTCCTCTCTTCGTCCCTTTTCTTCTTTGCTGGTCGCAGACTCCCAGGGCCTGGTGCAGCCGGGAAGCCCATCCCTTGTGCAGCTGCCCTCTTGCATGGCCCTAGGAGGTTTTAAAAGCCACCTTGCCACGGGAAAGCAAAGAGCCGCGAGGAAAAGGAGGACTAAACAACCCGGGTGGAATTAGTTCATTGCGGCTCACCTGTCTCCAGCCGCCGGTGCCTCGGTTAGACTCGGTGTAGTGACAGAGCCAATTAAGGAACAAGTAGCTCCCAGAAGTATCTTCCTTGGTCGATAAGCACTCTTCGGTTTCCTGAAACCTTGTTTTAGCTAGCTCCCTGGTGCGTGTTGGAGTTCTCCAGGGTCTCCCCGCTCTTAGTTGTTACCCAGAGCTTGGGTCTGTGTGAGAAGATGAGGCTCCCCGGGAAATCTCCAGATCGCCTTGTGGAGGAGGAGGGGAGAGAACAGAGTTTGCAGGCTTTTGATTATGAGACAGAAATGGTGTGAGCCTCGGTTAGAGTTGTTTTCGCTTCTTGTTCATCCTGCACAG
Seq C2 exon
GGCCAAAGCATGTCCTCCCTCCCTGGGTGCATGAGTTTGGCTGCAGCGCCAGCTGCAGCTGACTCTGCAGAGATTGCTGAGCTGCAGCAGGCGGTGGTTGAAGAGCTGGGTATCTCTATGGAGGAACTTCGTCAGTACATTGATGAGGAACTGGAAAAGATGGACTGCATACAGCAGCGCAAGAAGCAGCTCGCAGAGCTGGAGACGTGGGTACTACAGAAAGAGTCTGAAGTGGCTTATGTTGATCGGCTGTTTGATGATGCATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000015697-Setdb1:NM_001163641:1
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF114733=B2=WD(100=71.3),PF072276=DUF1423=PU(68.4=89.7)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGTCTCTCCTTCAGTTTGCC
R:
CTGCTTCTTGCGCTGCTGTAT
Band lengths:
349-1173
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: