BtaALTD0019692-1/2 @ bosTau6
Alternative 5'ss
Gene
ENSBTAG00000031171 | SH3GLB1
Description
Bos taurus SH3-domain GRB2-like endophilin B1 (SH3GLB1), mRNA. [Source:RefSeq mRNA;Acc:NM_001077993]
Coordinates
chr3:57429999-57431940:-
Coord C1 exon
chr3:57431902-57431940
Coord A exon
NA
Coord C2 exon
chr3:57429999-57430022
Length
0 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAAT
5' ss Score
6.41
3' ss Seq
CAATTTTTAATGCTGGCTAGATT
3' ss Score
3.36
Exon sequences
Seq C1 exon
CAACTAAACTCAGCACGCCTTGAAGGAGATAACATTATG
Seq A exon
NA
Seq C2 exon
ATTTGGGCAGAGGAAGTGACAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000031171-7-7,8-7-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0311413=BAR=FE(2.8=100)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTAAACTCAGCACGCCTTGA
R:
TTTGTCACTTCCTCTGCCCAA
Band lengths:
60-108
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development