GgaALTD0002489-1/2 @ galGal4
Alternative 5'ss
Gene
ENSGALG00000006284 | SH3GLB1
Description
Endophilin-B1 [Source:UniProtKB/Swiss-Prot;Acc:Q5ZIR1]
Coordinates
chr8:14877634-14881562:-
Coord C1 exon
chr8:14881524-14881562
Coord A exon
NA
Coord C2 exon
chr8:14877634-14878522
Length
0 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAAT
5' ss Score
6.41
3' ss Seq
GCTCTTTTAATGCTGACTAGATA
3' ss Score
3.33
Exon sequences
Seq C1 exon
CAACTAAACACCTCTCAGCCTGAAGAGAATAACATTATG
Seq A exon
NA
Seq C2 exon
ATATGGGCTGAGGAAGTGACAAAAGTAAGTAAATAACTTAGAAACTGCAGAATTCTGAAGTAATAACTTGTGTTGATATAATGTAATAAAGGATATAGTGTATTGTTGACTTGAGTACTGGTAGTGTCTGGTTGCATCAGAATACCTGGGATCCCTCTAGGGCCTTTCAAATTCCAGTGCTGATACAAAGTTCACAGCTCACTGTGTAGTAAACTATTTTGGCTAACTATCACTTAGTATCATATGACTGTCATGTGACAAGATGCAATAGAAAATGAAAAAACAAAAACTACAGGGCTTGTCTTTCAATTTGCTGGAATGGTGTCCTGTTTGTTGTTTTTTGTTTGTTTGTTTTGTCCTTGTTTCTTTTTTTTTTTTAAAAAAAAAACCTTCTCAATGAGCTTACCTGAAAATTTTCAGGAAGGTGGAGGTCTAGTAATGTAGCCTGTTCTGAAAAACACCTTTATGCTAGGTACGTGAGTTTTGCAAGGAGTCTTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006284-14-15,15-15-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0311413=BAR=FE(2.8=100)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCAGCCTGAAGAGAATAACAT
R:
CCAGTACTCAAGTCAACAATACACT
Band lengths:
148-196
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]