GgaALTD0002489-1/2 @ galGal3
Alternative 5'ss
Gene
ENSGALG00000006284 | SHLB1_CHICK
Description
NA
Coordinates
chr8:16645713-16648776:-
Coord C1 exon
chr8:16648738-16648776
Coord A exon
NA
Coord C2 exon
chr8:16645713-16645736
Length
0 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAAT
5' ss Score
6.41
3' ss Seq
GCTCTTTTAATGCTGACTAGATA
3' ss Score
3.33
Exon sequences
Seq C1 exon
CAACTAAACACCTCTCAGCCTGAAGAGAATAACATTATG
Seq A exon
NA
Seq C2 exon
ATATGGGCTGAGGAAGTGACAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006284-10-8,11-8-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.172 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0311413=BAR=FE(10.2=100)
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTAAACACCTCTCAGCCTGA
R:
TTTTGTCACTTCCTCAGCCCA
Band lengths:
61-109
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]