BtaALTD0024661-1/2 @ bosTau6
Alternative 5'ss
Gene
ENSBTAG00000008492 | ZMYM3
Description
zinc finger, MYM-type 3 [Source:HGNC Symbol;Acc:HGNC:13054]
Coordinates
chrX:84697026-84697369:+
Coord C1 exon
chrX:84697026-84697123
Coord A exon
NA
Coord C2 exon
chrX:84697204-84697369
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTCAAG
5' ss Score
1.99
3' ss Seq
ATGTTCCTTTGTGTTTGCAGATC
3' ss Score
11.35
Exon sequences
Seq C1 exon
GTCAGTCTTCTGAGGCAAAGCCCCAGACACCCTCTCAAACCAAAGTGGAGAACAGAAACACCATAAAGACCCTACAGGAAAATGGAAATCTGGGCAAG
Seq A exon
NA
Seq C2 exon
ATCCCTGTGAAGACCCGACCAGCCCCTGCTGCTTCCACTCCTCCACCACCACCGCCACCACCCCCAGCAGCACCCCGCAAAAACAAAGCTGCTATGTGTAAACCACTGATGCAGAATCGGGGGGTCTCCTGCAAGGTGGAGATGAAGTCCAAAGGGAGTCAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008492-22-21,23-21-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.821
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCAGACACCCTCTCAAACCA
R:
GGTCGGGTCTTCACAGGGAT
Band lengths:
97-103
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development