HsaALTD0007359-2/2 @ hg19
Alternative 5'ss
Gene
ENSG00000147130 | ZMYM3
Description
zinc finger, MYM-type 3 [Source:HGNC Symbol;Acc:13054]
Coordinates
chrX:70466203-70466542:-
Coord C1 exon
chrX:70466481-70466542
Coord A exon
chrX:70466445-70466480
Coord C2 exon
chrX:70466203-70466362
Length
36 bp
Sequences
Splice sites
5' ss Seq
AAGGTCGGG
5' ss Score
3.63
3' ss Seq
ATGTTCCTCTGTCTTTGCAGATC
3' ss Score
12.69
Exon sequences
Seq C1 exon
GTCAGTCTCCTGAGTCAAAACCCCAGACACCCTCTCAAACCAAAGTGGAGAACAGCAACACA
Seq A exon
GTGAGGACCCCAGAGGAAAATGGGAATTTGGGCAAG
Seq C2 exon
ATCCCTGTGAAGACCCGATCAGCTCCCACTGCTCCCACCCCTCCACCCCCACCACCCCCAGCAACACCCCGCAAAAACAAGGCTGCCATGTGTAAGCCACTGATGCAGAATCGGGGCGTCTCCTGCAAGGTGGAGATGAAGTCCAAAGGAAGTCAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000147130-22-22,23-22-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.828
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACCCCAGACACCCTCTCAAA
R:
CCTTGTTTTTGCGGGGTGTTG
Band lengths:
126-162
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)