MmuALTD0016329-2/2 @ mm9
Alternative 5'ss
Gene
ENSMUSG00000031310 | Zmym3
Description
zinc finger, MYM-type 3 [Source:MGI Symbol;Acc:MGI:1927231]
Coordinates
chrX:98607477-98607814:-
Coord C1 exon
chrX:98607753-98607814
Coord A exon
chrX:98607717-98607752
Coord C2 exon
chrX:98607477-98607633
Length
36 bp
Sequences
Splice sites
5' ss Seq
AAGGTCAGG
5' ss Score
6.23
3' ss Seq
ACACTCCTTTGATGCTGTAGACT
3' ss Score
6.17
Exon sequences
Seq C1 exon
GTCAGTCTTCTGAGTCCAAGCCCCAGACACCCTCTCAAACCAAAGTGGAGAACAACCACACA
Seq A exon
GTGAGGACCCCAGACGAGAATGGGAATTTGGGCAAG
Seq C2 exon
ACTCCTGTGAAGAGAGCAACTCCAAGTGTGCCCACTCCTCCACCCCCACCGCCCCCGGCAACACCCCGCAAAAACAAAGCTGCCATGTGTAAGCCGCTGATGCAGAACCGGGGTGTCTCCTGCAAGGCGGAAATGAAGTCCAAAGGAAGTCAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031310-31-28,32-28-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.887
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCAGACACCCTCTCAAACCA
R:
GCTTTGTTTTTGCGGGGTGTT
Band lengths:
121-157
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: