BtaALTD0024768-2/2 @ bosTau6
Alternative 5'ss
Gene
ENSBTAG00000012353 | ZNF34
Description
zinc finger protein 34 [Source:HGNC Symbol;Acc:HGNC:13098]
Coordinates
chr14:1497569-1501747:-
Coord C1 exon
chr14:1501635-1501747
Coord A exon
chr14:1501625-1501634
Coord C2 exon
chr14:1497569-1497621
Length
10 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
3' ss Seq
TTCTGTGTATTTTATTTTAGGTT
3' ss Score
11.77
Exon sequences
Seq C1 exon
ATATGCAGGAACATCCTTGTGCGTCTTTTGTGCATTAGCAAGAATTTCTAAAGGGCACGTACCTTCAATTTGGTTTCCTGTCCCAGGGCTTCGAAGAGTTTCAGCTCTGCCAG
Seq A exon
GTAGGGCCAG
Seq C2 exon
GTTATATAGGTGCACTTTGTGTATCTACTTGGGGAGTTTTTTGCATGCAGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012353-3-2,4-2-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGGCACGTACCTTCAATTTGG
R:
CCCCAAGTAGATACACAAAGTGCA
Band lengths:
96-106
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development