BtaEX0041248 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000012353 | ZNF34
Description
zinc finger protein 34 [Source:HGNC Symbol;Acc:HGNC:13098]
Coordinates
chr14:1497167-1503684:-
Coord C1 exon
chr14:1502342-1503684
Coord A exon
chr14:1497569-1497621
Coord C2 exon
chr14:1497167-1497307
Length
53 bp
Sequences
Splice sites
3' ss Seq
TTCTGTGTATTTTATTTTAGGTT
3' ss Score
11.77
5' ss Seq
TAGGTGAGT
5' ss Score
8.83
Exon sequences
Seq C1 exon
GTCATGAGTCCAGACTGCCAACTGGCGGCAGCCTTTGGAGCCAAAGCTTAGCTCTTATGTTGCCTGGCAAATCCCATGGACGGAGGAGCCCTCCGTGGGGTCGCTAGGAGTCGGACACGACTGAGCGACTTCACTTTCACTTTCCACATTCATGCATTGAAGGAAATGGCAACCCACTTCAGTGTTCTTGCCTGGAGGATCCCAGGGATGGGGGAGCCTGGTGGGCTGCTGTCTCTGGGGTCGCACAGAGTCGGACACGACTGAAGCGACTTAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCTGACTGCTGACCACCGAGACGCGGAGTCCTGTTCCCAGAGCGACCGGAAGGCGCCTCCTGCCAGTATCTCGGAGGAGGGATCGTCACTTCCGGTCAGATTTAGGTCTTCAGGGCTTAGGGAGCAGGCGGGGCCTGGTCGGTCATCCGCTGTTGGGCGGCGCTGAG
Seq A exon
GTTATATAGGTGCACTTTGTGTATCTACTTGGGGAGTTTTTTGCATGCAGTAG
Seq C2 exon
GGAGCAGAGTCCGCTTGGGAGGCCGAGTGCTGAGGCCAACTGTGGGAGGGGCCAGGCAGTGATTGGCTCCTGCATCCATCCATCCCAGGAAGCCCAGGGTACCAGGGGATGGCAGCTTTGGATCTGTGTGCCCTGCCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012353_MULTIEX1-2/6=C1-3
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0135222=KRAB=PU(9.1=27.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGTCTTCAGGGCTTAGGGAG
R:
GGATGGATGCAGGAGCCAATC
Band lengths:
145-198
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development