BtaEX0041247 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000012353 | ZNF34
Description
zinc finger protein 34 [Source:HGNC Symbol;Acc:HGNC:13098]
Coordinates
chr14:1497569-1503684:-
Coord C1 exon
chr14:1502342-1503684
Coord A exon
chr14:1501635-1501747
Coord C2 exon
chr14:1497569-1497621
Length
113 bp
Sequences
Splice sites
3' ss Seq
TACTTTTTGCTTGTACACAGATA
3' ss Score
7.88
5' ss Seq
CAGGTAGGG
5' ss Score
9.46
Exon sequences
Seq C1 exon
GTCATGAGTCCAGACTGCCAACTGGCGGCAGCCTTTGGAGCCAAAGCTTAGCTCTTATGTTGCCTGGCAAATCCCATGGACGGAGGAGCCCTCCGTGGGGTCGCTAGGAGTCGGACACGACTGAGCGACTTCACTTTCACTTTCCACATTCATGCATTGAAGGAAATGGCAACCCACTTCAGTGTTCTTGCCTGGAGGATCCCAGGGATGGGGGAGCCTGGTGGGCTGCTGTCTCTGGGGTCGCACAGAGTCGGACACGACTGAAGCGACTTAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCTGACTGCTGACCACCGAGACGCGGAGTCCTGTTCCCAGAGCGACCGGAAGGCGCCTCCTGCCAGTATCTCGGAGGAGGGATCGTCACTTCCGGTCAGATTTAGGTCTTCAGGGCTTAGGGAGCAGGCGGGGCCTGGTCGGTCATCCGCTGTTGGGCGGCGCTGAG
Seq A exon
ATATGCAGGAACATCCTTGTGCGTCTTTTGTGCATTAGCAAGAATTTCTAAAGGGCACGTACCTTCAATTTGGTTTCCTGTCCCAGGGCTTCGAAGAGTTTCAGCTCTGCCAG
Seq C2 exon
GTTATATAGGTGCACTTTGTGTATCTACTTGGGGAGTTTTTTGCATGCAGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012353_MULTIEX1-1/6=C1-2
Average complexity
C1*
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTAGCAGCAGCAGCAG
R:
AGATACACAAAGTGCACCTATATAAC
Band lengths:
258-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development