HsaEX0073470 @ hg38
Exon Skipping
Gene
ENSG00000196378 | ZNF34
Description
zinc finger protein 34 [Source:HGNC Symbol;Acc:HGNC:13098]
Coordinates
chr8:144778439-144787325:-
Coord C1 exon
chr8:144787279-144787325
Coord A exon
chr8:144780232-144780280
Coord C2 exon
chr8:144778439-144778525
Length
49 bp
Sequences
Splice sites
3' ss Seq
TCTGTGTTATTTTATTTTAGGCC
3' ss Score
10.47
5' ss Seq
CTGGTAGGT
5' ss Score
8.37
Exon sequences
Seq C1 exon
GGCCGAACGGGCGAGGTTGGGCTGCCGTGCTGCTCGGCGGCGCTGAG
Seq A exon
GCCAAATAGTTGCATCACATGTATCTAATCCGAGAGTCTCATGCTTCTG
Seq C2 exon
CTCCTCAGTGACCAGCTCCTGCTCACTGCCCTCAGAAAGCCCAACCCTCAGGCAATGGCGGCCTTGTTCCTGTCTGCCCCACCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000196378_MULTIEX1-4/7=C1-5
Average complexity
C1*
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.007
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development