HsaEX0073470 @ hg19
Exon Skipping
Gene
ENSG00000196378 | ZNF34
Description
zinc finger protein 34 [Source:HGNC Symbol;Acc:13098]
Coordinates
chr8:146003824-146012725:-
Coord C1 exon
chr8:146012664-146012725
Coord A exon
chr8:146005613-146005665
Coord C2 exon
chr8:146003824-146003910
Length
53 bp
Sequences
Splice sites
3' ss Seq
TCTGTGTTATTTTATTTTAGGCC
3' ss Score
10.47
5' ss Seq
TAGGTGAGT
5' ss Score
8.83
Exon sequences
Seq C1 exon
TTGGCGGGGAGGGAGGGCCGAACGGGCGAGGTTGGGCTGCCGTGCTGCTCGGCGGCGCTGAG
Seq A exon
GCCAAATAGTTGCATCACATGTATCTAATCCGAGAGTCTCATGCTTCTGGTAG
Seq C2 exon
CTCCTCAGTGACCAGCTCCTGCTCACTGCCCTCAGAAAGCCCAACCCTCAGGCAATGGCGGCCTTGTTCCTGTCTGCCCCACCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000196378_MULTIEX1-3/6=C1-4
Average complexity
C1*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.267 C2=0.125
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)