BtaALTD0024914-2/2 @ bosTau6
Alternative 5'ss
Gene
ENSBTAG00000021438 | ZNF821
Description
Bos taurus zinc finger protein 821 (ZNF821), mRNA. [Source:RefSeq mRNA;Acc:NM_001038152]
Coordinates
chr18:39362125-39364918:+
Coord C1 exon
chr18:39362125-39362250
Coord A exon
chr18:39362251-39362269
Coord C2 exon
chr18:39364773-39364918
Length
19 bp
Sequences
Splice sites
5' ss Seq
CTGGTAATG
5' ss Score
5.67
3' ss Seq
GACCAGTTTGTGTGTTCCAGGTG
3' ss Score
8.71
Exon sequences
Seq C1 exon
GGGATCAAGTATTTGCTGGGCTAGAAGAGCAAGCCCGCCAGGCGATGATGAAAACTGATTTTCCTGGAGACCTTGGCAGTCAGCGACAAGCTATCCAACAACTAAGAGATCAGGACTCCAGTAGCA
Seq A exon
GTGAGTTCTGCACCTTCTG
Seq C2 exon
GTGACAGTGAGGGAGATGAAGAGGAGACCACACAAGATGAAGTCTCTTCCCATACGTCAGAGGAAGATGGAGGAGTGGTCAAAGTGGAAAAAGAGTTAGAAAATGCAGAACAGCCTGTTGGTGGAAAGAAAGTAGTAGAGCATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021438-8-10,9-10-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.980
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGATCAGGACTCCAGTAGCA
R:
TCCACTTTGACCACTCCTCCA
Band lengths:
110-129
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development