Special

BtaEX0041563 @ bosTau6

Exon Skipping

Gene
Description
Bos taurus zinc finger protein 821 (ZNF821), mRNA. [Source:RefSeq mRNA;Acc:NM_001038152]
Coordinates
chr18:39355019-39364918:+
Coord C1 exon
chr18:39355019-39355133
Coord A exon
chr18:39362125-39362250
Coord C2 exon
chr18:39364773-39364918
Length
126 bp
Sequences
Splice sites
3' ss Seq
TTTTTCCTTGTGACCACCAGGGG
3' ss Score
7.49
5' ss Seq
GCAGTGAGT
5' ss Score
7.39
Exon sequences
Seq C1 exon
GTCGGCACCTTGCAAGGAGGTGGTAACATCCAGTCGTGAAACTGGGAAAAGCCAGAGCTCTTGGATCAGGAAAACATGTCCCGTCGGAAACAGACAAATCCAAATAAAGTTCACT
Seq A exon
GGGATCAAGTATTTGCTGGGCTAGAAGAGCAAGCCCGCCAGGCGATGATGAAAACTGATTTTCCTGGAGACCTTGGCAGTCAGCGACAAGCTATCCAACAACTAAGAGATCAGGACTCCAGTAGCA
Seq C2 exon
GTGACAGTGAGGGAGATGAAGAGGAGACCACACAAGATGAAGTCTCTTCCCATACGTCAGAGGAAGATGGAGGAGTGGTCAAAGTGGAAAAAGAGTTAGAAAATGCAGAACAGCCTGTTGGTGGAAAGAAAGTAGTAGAGCATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021438_CASSETTE2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact

Alternative protein isoforms (Ref)

No structure available
Features
Disorder rate (Iupred):
  C1=1.000 A=1.000 C2=0.980
Domain overlap (PFAM):

C1:
NO
A:
NO
C2:
NO


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Conservation
Chicken
(galGal4)
ALTERNATIVE
Chicken
(galGal3)
ALTERNATIVE
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTAACATCCAGTCGTGAAACTG
R:
TGCTCTACTACTTTCTTTCCACCA
Band lengths:
237-363
Functional annotations
There are 1 annotated functions for this event
PMID: 31911676
[CRISPR screen]. Conserved poison exon with pro-oncogenic impact when depleted: HeLa No Change at 14 days (FC=0.846, FDR=0.038), PC9 No Change at 14 days (FC=0.953, FDR=0.584), Late Xenograft Enriched (FC=1.741, FDR=0.002).


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]


SPECIAL DATASETS

  • Pre-implantation embryo development