RnoALTD0034645-2/2 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000000262 | Zfp821
Description
zinc finger protein 821 [Source:RGD Symbol;Acc:1306674]
Coordinates
chr19:41944450-41947561:-
Coord C1 exon
chr19:41947436-41947561
Coord A exon
chr19:41947417-41947435
Coord C2 exon
chr19:41944450-41944598
Length
19 bp
Sequences
Splice sites
5' ss Seq
CTGGTAATG
5' ss Score
5.67
3' ss Seq
GACCAGTTTATGTGTTCCAGGTG
3' ss Score
6.77
Exon sequences
Seq C1 exon
GGGATCAAGTATTTGCTGGGTTAGAAGAACAAGCCCGACAGGCAATGATGAAAACCGAGTTTCCTGGAGACCTTGGCAGTCAGCGACAAGCTCTCCAACATCTAAGAGACCAGGACTCCAGTAGCA
Seq A exon
GTGAGTTCTGCACCTTCTG
Seq C2 exon
GTGACAGTGAAGGTGACGAAGAGGAGACCACACAAGATGAAGTATCTTCCCACACATCAGAGGAAGATGGTGGGGTAGTCAAAGTGGAAAGAGAATTAGACAGTGCAGAAGCACCTGTCGGTAGTGGGGACGCACTGGTGGAGCACGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000262-16-11,17-11-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTTCCTGGAGACCTTGGCAG
R:
TGTGTGGTCTCCTCTTCGTCA
Band lengths:
102-121
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]