BtaALTD0024962-1/3 @ bosTau6
Alternative 5'ss
Gene
ENSBTAG00000031869 | ZSCAN26
Description
zinc finger and SCAN domain containing 26 [Source:HGNC Symbol;Acc:HGNC:12978]
Coordinates
chr23:30165913-30171396:-
Coord C1 exon
chr23:30171296-30171396
Coord A exon
NA
Coord C2 exon
chr23:30165913-30166394
Length
0 bp
Sequences
Splice sites
5' ss Seq
GGGGTGAGT
5' ss Score
7.93
3' ss Seq
TCTTGTTATTACATTTTCAGGGG
3' ss Score
8.32
Exon sequences
Seq C1 exon
AGAGCGACCGTCAAGTGCGCCGCGGAGCGAGAGCGGCCGCCCAGTAAAGAGCTAACAAGCTGCTTGAAAGCTTTTGGCTTTTCCCGTGGGTCCTTGGAGGG
Seq A exon
NA
Seq C2 exon
GGGTATCCCTGAGGAGGCAGTCAAAAGAAAGTTGCCCCAAATAGAGCAGTCTGAAGGTGGGGATGGCGATAGCATGGGGAACCGTTCCTTCCCTGGCTCCTGTGAACCTGAAGAAGGAGGGGCTTCAGGTGGTAAAGGAGGATCACCTCTCTGCTCGGGAACAGGGAGTCAAGCTTCAGGGAAACGGCACAGGCTTCAGGCAGGAGCCCCTGTGTAAGCGGTTCAGGCAGTTGCGCTATGAAGAGACCACAGGACCTCGAGAGGCCCTGAGCCGGCTCCGGGAACTCTGCCGACAATGGCTACAGCCTGAGACCCACACCAAGGAGCAGATCCTGGAGCTGCTGGTGCTGGAGCAGTTCCTGACCATCCTGCCTGAGGAGCTTCAGGCCCGGTTGCGGGAGCATCACCTGGAGAGCGGGGAAGATGCGGTGGTTTTCCTGGAGGATTTGCAGCTGGAGCTGGGAGGAACAGGACAACAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000031869-0-5,1-5,3-5-1/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.129
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0202312=SCAN=WD(100=68.6)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCGCCCAGTAAAGAGCTAAC
R:
TCTTCAGGTTCACAGGAGCCA
Band lengths:
180-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development