BtaEX0041644 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000031869 | ZSCAN26
Description
zinc finger and SCAN domain containing 26 [Source:HGNC Symbol;Acc:HGNC:12978]
Coordinates
chr23:30165913-30171348:-
Coord C1 exon
chr23:30171296-30171348
Coord A exon
chr23:30169863-30169927
Coord C2 exon
chr23:30165913-30166394
Length
65 bp
Sequences
Splice sites
3' ss Seq
ACTATTTCACTTATCTCTAGAGT
3' ss Score
7.18
5' ss Seq
ATGGTATAA
5' ss Score
2.05
Exon sequences
Seq C1 exon
GAGCTAACAAGCTGCTTGAAAGCTTTTGGCTTTTCCCGTGGGTCCTTGGAGGG
Seq A exon
AGTCACTCAAGAGTCATCAAAATCAAGAGTCTCCACACACCAAGAGCCTGTTCAAAAGATTGATG
Seq C2 exon
GGGTATCCCTGAGGAGGCAGTCAAAAGAAAGTTGCCCCAAATAGAGCAGTCTGAAGGTGGGGATGGCGATAGCATGGGGAACCGTTCCTTCCCTGGCTCCTGTGAACCTGAAGAAGGAGGGGCTTCAGGTGGTAAAGGAGGATCACCTCTCTGCTCGGGAACAGGGAGTCAAGCTTCAGGGAAACGGCACAGGCTTCAGGCAGGAGCCCCTGTGTAAGCGGTTCAGGCAGTTGCGCTATGAAGAGACCACAGGACCTCGAGAGGCCCTGAGCCGGCTCCGGGAACTCTGCCGACAATGGCTACAGCCTGAGACCCACACCAAGGAGCAGATCCTGGAGCTGCTGGTGCTGGAGCAGTTCCTGACCATCCTGCCTGAGGAGCTTCAGGCCCGGTTGCGGGAGCATCACCTGGAGAGCGGGGAAGATGCGGTGGTTTTCCTGGAGGATTTGCAGCTGGAGCTGGGAGGAACAGGACAACAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000031869_MULTIEX1-2/3=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.129
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0202312=SCAN=WD(100=68.6)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTTGGCTTTTCCCGTGGGTC
R:
CTTTACCACCTGAAGCCCCTC
Band lengths:
167-232
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development