BtaINT0166410 @ bosTau6
Intron Retention
Gene
ENSBTAG00000031869 | ZSCAN26
Description
zinc finger and SCAN domain containing 26 [Source:HGNC Symbol;Acc:HGNC:12978]
Coordinates
chr23:30168060-30171348:-
Coord C1 exon
chr23:30171296-30171348
Coord A exon
chr23:30168137-30171295
Coord C2 exon
chr23:30168060-30168136
Length
3159 bp
Sequences
Splice sites
5' ss Seq
GGGGTGAGT
5' ss Score
7.93
3' ss Seq
CTTGATTTCTTGTGGGGCAGAGA
3' ss Score
3.78
Exon sequences
Seq C1 exon
GAGCTAACAAGCTGCTTGAAAGCTTTTGGCTTTTCCCGTGGGTCCTTGGAGGG
Seq A exon
GTGAGTGGTGATTGTGCTCCATTTTGGGGAGTAACTGCGGCCCGTGGGCTGGGAAGCAGCTGATTTCCTTGGAGGTGCGGAGAAGCCTTACCCCATGGAGGAGACTTGTGGACTCTGAGTGGGCGAGGACAGGAGATGTTAATCTTGGGGCCTAGGAGAGGAATGATGCTGTGGATCTTGTTCTAGAGGCACAATCTTCTGCATGTGTGTATATATATATATTCTATCCACTGAGCTCAATTTTAAATATGTATAAAGTTAAGCCTTAGAAGGTGACTTTTGAGCAAAAGCCTGAGAGAGGTTTAAAAAACCTACGTGGCCTTTGCGGACACGAGTTTTCTAGTAAGGGGCAACAGCAGATGCAAAGGCGCTAAAGCAGGAGCTTGCTTATCATACTCGAGGAGTAGCTGGGAGCCCAGAGTGGTTAGAGCACAGTCAACAAGGGGAAAGTGTGTAGAAAATGCTGTCAGAGAGATGGGGGTGGGAGGAGGCCTGTAGAAAAAGTGGGTATTGTGTAAGGAATTTGTTCATTTCTTGATGTGGAAGGAGTATTCGGAAGGTTTTGAGCAAAGGAAAAACACCTGACAGGTTTTTAAGCATCTACAGCCGGGAACTCGAGATGAAACCAGACTGGAGGGCAAGACTGGAATCGGGTGACTGGAGGCAGGAAAAACGCTGATTTCTCAGCTTGAAGGCTGTCAGGCAAGTGACTTCTCTTATTGGGGGAAAGCCTTTTTGTTCTATCCTGGCTTTCACCCGATTGGATGAAGTCCACTTACATAAATGAAAGCCATCTGCTTTACTCAGTCGACTCCTTTAAATGTTAATCTCATCTGAAACACCCTCACAGAAACACCCACTGTAATGTTTGGCTAAATATCTGGGTACCTGATGGTGCAGTCAAGTTGTCAAATAAAATTCACCATCATAGTACCAAACTGTTTTCTGGCTAACCATCATTACTTTCATGGACATTTTTTCACTTCTTTTAAGAATACAGTTGACCCTTAAACAACATGGGTTAGCGGCCCATAGTGAAGTCAGAAATCCAACTATAACTTTACAGTCTGCTCTGTCTACTCACAGGGCCACATTGCAGATTTGGCCTATTTGAAAAAAAAGAAATCCATGTATAAGTGGACCCATGTAGTTCACTCTCCTGTTGTTTAAGGGTCAGCTGCAGCAGCATTGGCGTTTTGGATTGTAAATCCTGTTTTGACAAATAAGTATCAGCTGGGAGTGATACTATATAACAGCGAACTGAATTTGGAACCTAACTGGACACAGCCACTGAGTGAGTGAGCCTTATTCATGCTGATTCAGAAGTGTGTGCCAACAATTGGCAGATACTATTTCACTTATCTCTAGAGTCACTCAAGAGTCATCAAAATCAAGAGTCTCCACACACCAAGAGCCTGTTCAAAAGATTGATGGTATAATTCTCTGAGTTTTTTTTTTTTTAAGGTTGTGTTGGGTCTTCATTGCTGGGCATGGGGGGTACTCTGCATTGCAGTGCATGGGGTTCTCACGGAGGTGGTTTCTCTTGTTATGAGCACAGGCTCAAGGGTACATGGGCTTCAGTAGTGCAGCTTTTGGGCTCAATAGTTGCCGTTCCTGGGCCCCAGAGCACAGGCTCAACAGTTGTGGGACACAGGCTTAGTTGCTCTGAGGCGTGTGGGATCTTCCCAGACCAGGGATTGAACCCTTGTCTCCTGCATTGGCAGGCAGTTTCTTAACCACTGAGCCACCAGGAAGCCTCTCTGAGTTCATCTTGACATGTTGCGTTTGATAGGCTTTTGTAAGGTGTCCAGGAACCAGATAGCCAGAAGAAAAATCTGTCACTCTTGAGAGGTCTGGGCAGAAAAATAAGGAAATCATTGGCATAAAGATGGTACATAACATACCTGTCCTGTATGTTACCCTCTCCTAGCTTAGGTCCTATTTCTCTTTTTCCTTTCAATGTCCTGTTTTTTGAAAGAGTAATTTTTGCTTGTGCCATTTTTCTCATTTTCCTGTGGCTGGGTGACTGTTCTCCCTATCCAATGACCAGAATTGCCTTTACAGAGGTTGCAGTGACCTCTGTTTGTTTGTTTTAAATAATATTTATTTAAGTATTTATGGCTCTGCTGGGTCTTAGTTGTGACATGCTGGATCTTCTAGATGTGGCATGTGGGATCTAGTTCTCTGACCAGGGATTGAACTCGGGACCCCTGCATTTGTTGCAAAGAGTCTTGGCTGCTGGACTGTCAGGGAAGTCACTGACTTTTTTTTGTTTTTGTTTGTATGTTTTTTAGAAATACTAATAGAAATACTAATCATCTGGGCTCCCCAGATGATTCAGCAGTAAAGAATTCACCTGCAGTGCAGGAGATGCAAGAGACATGGGTTCGATTCCTGGGTCAGGAAGATCCTCTGGAGGGAGGACGTGGCAGCCCGCTTCAGTGTTCTTGCCTGGAAAATCCTGTGGACAGAGAAGCCTGGCGGTCTACAGTCCATAGGGTTGCAAAAAGTCGGATGCTACTGAGCACAGTATAGTTATGGACAAGGAGACATGGAAAGTTTTGGGGTTTTCTGTTTGTTTTGGTTTTAATTTTTGGCTGTGGATGTGTCTTCATTGCTGCGTGCAAGGCTTTCTCTAGTTGCAGTGAGTGAGGACTACTCTCCAGTTGAGATGCCCTCATTTACCTCAAAACATGTCTCTGAATTAGGTATTATCTTCATTTTACAAATGAGTAAACAGTGTAGTGACAGAATTGGATGGAATGCAGGCCCCTTGTCTCCTGGATTCTACTGTCTTTGTTTTTCTACCTTCCTGCTTGTTCCTTCTTCTCTTGCTTACACGTAGGTGTTTCCCAGGTTCCAGCCCCACTCACCCTTTTCCCAGCTATAACTAACAACTACCCTGAACATGTGAGGTTTTCCAACAGCTCTGCGCTCAGGTTTTTCTCTGTCTGGAAAACCCTTTCTGTATTTTCTTGTCTGACTTTCACATGTCTTTTACGAGTCAGAAGGGCTCACCTTCAAGAGGCCTTTTCTGACCTGCTAACAGGGATTAAGTGTCTTACCACTGAGCTCTGCTAGCATCCTGTGTCTACCTTCACCGTGGCACTTAATACATGCAACTGTAATTGCTTATTTACTTGATTTCTTGTGGGGCAG
Seq C2 exon
AGAGCTATAGAGGCCAGAGGTTATTTCATCTCTGTATCTCCAGCAACTAAGAGTGTGGCACCTAGACAATAAATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000031869:ENSBTAT00000035587:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]