BtaEX0000187 @ bosTau6
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1MPL6]
Coordinates
chr23:28330566-28331131:-
Coord C1 exon
chr23:28331099-28331131
Coord A exon
chr23:28330912-28330959
Coord C2 exon
chr23:28330566-28330666
Length
48 bp
Sequences
Splice sites
3' ss Seq
CTGGTCTTGTTCCCCACCAGGCA
3' ss Score
9.01
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
GTGAAAAAGGACGGACCTACACCCAGGCTTCAA
Seq A exon
GCAGTGATAGTGCCCAGGGCTCTGATGTGTCTCTCACGGTTCCTAAAG
Seq C2 exon
CTGCATCTGAATGCATCTGTGCTCCTATTAGCATAACATGAGGAGATGGGGAGACTGGTGACCCCTGCCCACTGCGCCCCCTCCCCACCCTGAGCTGTGTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005146-'8-15,'8-13,9-15
Average complexity
S
Mappability confidence:
100%=75=75%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.750 A=0.588 C2=NA
Domain overlap (PFAM):
C1:
PF126692=P12=FE(25.6=100),PF066236=MHC_I_C=FE(37.9=100)
A:
PF126692=P12=PD(11.6=29.4),PF066236=MHC_I_C=PD(51.7=88.2)
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACGGACCTACACCCAGG
R:
CACAGCTCAGGGTGGGGAG
Band lengths:
124-172
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development