MmuEX0022267 @ mm10
Exon Skipping
Gene
ENSMUSG00000073411 | H2-D1
Description
histocompatibility 2, D region locus 1 [Source:MGI Symbol;Acc:MGI:95896]
Coordinates
chr17:35266482-35267499:+
Coord C1 exon
chr17:35266482-35266514
Coord A exon
chr17:35266688-35266726
Coord C2 exon
chr17:35266866-35267499
Length
39 bp
Sequences
Splice sites
3' ss Seq
TTTGTTTTGTTTTACCCTAGGCT
3' ss Score
10.16
5' ss Seq
AAGGTGACA
5' ss Score
5.19
Exon sequences
Seq C1 exon
GTGGAAAAGGAGGGGACTATGCTCTGGCTCCAG
Seq A exon
GCTCCCAGAGCTCTGAAATGTCTCTCCGAGATTGTAAAG
Seq C2 exon
CGTGAAGACAGCTGCCTGGACTGTACTGAGTGACAGACGATGTGTTCAGGTCTCTCCTGTGACATCCAGAGCCCTCAGTTCTCTTTACACAACATTGTCTGATGTTCCCTGTGAGCTTGGGTTCAGTGTGAAGAACTGTGGAGCCCAGCCTGCCCTGCACACCAGGACCCTATCCCTGCACTGCCCTGTGTTCCCTTCCATAGCCAACCTTGCTGCTCCAGCCAAACACTGGGGGACATCTGCATCCTGTAAGCTCCATGCTACCCTGAGCTGCAGCTCCTCACTTCCACACTGAGAATAATAATTTGAATGTGGGTGGCTGGAGAGATGGCTCAGCGCTGACTGCTCTTCCAAAGGTCCTGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCTGTAATGGGATCTAACACCCTCTTCTGCAGTGTCTGAAGACAGCTACAGTGTACTTACATATAATAATAAATAAGTCTTTAAAAAATAATTTGAAAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000073411-'26-25,'26-21,27-25
Average complexity
S
Mappability confidence:
89%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.494 A=0.219 C2=0.000
Domain overlap (PFAM):
C1:
PF066236=MHC_I_C=FE(42.3=100)
A:
PF066236=MHC_I_C=PD(46.2=85.7)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGGAGGGGACTATGCTCTGG
R:
AAGAGAACTGAGGGCTCTGGA
Band lengths:
112-151
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types