DreEX6071829 @ danRer10
Exon Skipping
Gene
ENSDARG00000092731 | mhc1uka
Description
major histocompatibility complex class I UKA [Source:ZFIN;Acc:ZDB-GENE-060825-152]
Coordinates
chr19:7130485-7131671:+
Coord C1 exon
chr19:7130485-7130583
Coord A exon
chr19:7130699-7130722
Coord C2 exon
chr19:7131540-7131671
Length
24 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTTTTTGTTTAAAGGCT
3' ss Score
8.71
5' ss Seq
ATCGTAAGT
5' ss Score
10.44
Exon sequences
Seq C1 exon
CTTCTGCTACCATTGGCATCATCATTGGCATTGTACTTTCTGCTGTCCTACTGCTGTTTATTGCTGTTGCTGGGTTCGTGGTGTATTGGAAAAAGAAAG
Seq A exon
GCTTTAAACCTGTTCCTGCAAATC
Seq C2 exon
CTGTGAACTCTGACAATGACTCTGGCTGTGGCAGTGGATCAGACAGTGTTTCACACAAAAGCTCAGACAGTACATCAGACATCAGCTCTGTTTGCTCCGACAACAGCTCTGACAGCACCACAGCTTTATTAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000092731-'6-11,'6-8,8-11=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.444 C2=0.644
Domain overlap (PFAM):
C1:
PF146101=DUF4448=FE(13.3=100)
A:
PF146101=DUF4448=PD(0.8=22.2)
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGCTGTCCTACTGCTGTTT
R:
CACTGTCTGATCCACTGCCAC
Band lengths:
109-133
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]