BtaEX0000333 @ bosTau6
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1BI37]
Coordinates
chr23:27603371-27604052:+
Coord C1 exon
chr23:27603371-27603403
Coord A exon
chr23:27603551-27603597
Coord C2 exon
chr23:27603745-27604052
Length
47 bp
Sequences
Splice sites
3' ss Seq
CAAGTTCTGTTCTATCCCAGGAG
3' ss Score
6.74
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
ATGGAGATGGAGGGAGCTATACTCAAACTGCAA
Seq A exon
GAGAAGATAGGATCTGAGGCCCTAATGTATCTCTCATGCTCCTAAAG
Seq C2 exon
TGTGAAACTGATGGCTTGTGTGGAACTGAGTGAAGAAAGTTGTGTTCACGCCCCCACTCTATGACTTCAGAACCCAGACTTCTCTTTTTGTAGAGATGTCTGAATGTGTCTGTGTTCCTGTAATGTAATGTGAGAAAGTGGGGAGGCTGACCCACCCCTGCCCACAATGGCCTCCATTTCTTCCCCCCACCATTGTGTAATGGTATCATAGGTGTTTGTGTATCATCGTATTGTTTATTTACATATGTGCAGTTCTTTGTTGTATATCAGTGCTACCTCAATAAACCTGTGTAAAAAATATCATTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008959-'13-15,'13-13,15-15
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.500 A=0.400 C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGATGGAGGGAGCTATACT
R:
ACACAGACACATTCAGACATCTCT
Band lengths:
147-194
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development