BtaEX0000617 @ bosTau6
Exon Skipping
Description
Bos taurus zinc finger protein 419 (ZNF419), mRNA. [Source:RefSeq mRNA;Acc:NM_001101932]
Coordinates
chr18:64872945-64875427:+
Coord C1 exon
chr18:64872945-64872983
Coord A exon
chr18:64874737-64874863
Coord C2 exon
chr18:64875329-64875427
Length
127 bp
Sequences
Splice sites
3' ss Seq
AACCATCCCCATCATGGCAGGGC
3' ss Score
5.41
5' ss Seq
TCGGTAAGG
5' ss Score
10.48
Exon sequences
Seq C1 exon
GTTGCTGTGGCTGCGGAGTGGCTTCCAGACCATGAAGAG
Seq A exon
GGCCAAGTGACCTTTGAGGACGTGGCTGTCTACTTCTCCTGGGAGGAGTGGGGGCTCCTTGATGAGGCCCAGAGGCTCCTGTACTGTGGGGTGATGCTGGAGACCTTCTCACTGATGGCGTCTCTCG
Seq C2 exon
GACTCACACCGTCCAGGACCCATGCCATGACTCAGCTGGAGCAGCGGGGGGAGCCCTGCGTGCCTACCGGGGGAGTCTCAACCACAGCCACACCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017613-'2-2,'2-1,3-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.154 A=0.000 C2=0.676
Domain overlap (PFAM):
C1:
NO
A:
PF0135222=KRAB=WD(100=95.3)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTGCTGTGGCTGCGGAG
R:
CTGCTGGTGTGGCTGTGG
Band lengths:
138-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development