MmuEX6008357 @ mm10
Exon Skipping
Gene
ENSMUSG00000066838 | Zfp772
Description
zinc finger protein 772 [Source:MGI Symbol;Acc:MGI:2385265]
Coordinates
chr7:7205513-7207563:-
Coord C1 exon
chr7:7207525-7207563
Coord A exon
chr7:7206246-7206372
Coord C2 exon
chr7:7205513-7205599
Length
127 bp
Sequences
Splice sites
3' ss Seq
CAAATTTCTCCACTGATCAGGAC
3' ss Score
4.88
5' ss Seq
TGGGTAAGA
5' ss Score
8.91
Exon sequences
Seq C1 exon
GTTTCCCAGTATTCAGTGAAACCTGCCAACCAGGAAGAG
Seq A exon
GACTGCTTATCCTTTGAGGATGTGGCTGTGTACTTCTCCTGGGAGGAATGGACACTGCTTGATGACTCTCAAAGGCTCCTGTACCAGACTGTGATGTCAGAGATCTTAACACTCATGTCTTCTTTGG
Seq C2 exon
GACTTATACCTTCTGGGATCCATGAGATGACTCAGCTGAAGTCTTGGGGAGAGCCCTCTGTGCCTGCGTTGAGATTCCTGACTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000066838-'5-4,'5-2,6-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.077 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0135222=KRAB=WD(100=95.3)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCCAGTATTCAGTGAAACCTGC
R:
TGGAGTCAGGAATCTCAACGC
Band lengths:
122-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types