RnoEX0101689 @ rn6
Exon Skipping
Gene
ENSRNOG00000015598 | Zfp772
Description
zinc finger protein 772 [Source:RGD Symbol;Acc:1308782]
Coordinates
chr1:69739285-69741278:-
Coord C1 exon
chr1:69741240-69741278
Coord A exon
chr1:69739996-69740122
Coord C2 exon
chr1:69739285-69739371
Length
127 bp
Sequences
Splice sites
3' ss Seq
TCAAGTTTCCCCATGTGCAGGGC
3' ss Score
5.63
5' ss Seq
TCGGTAAGA
5' ss Score
10.53
Exon sequences
Seq C1 exon
GTTTCCCAGTACTCAGTGAAACCTGCCAACCAGGAAGAG
Seq A exon
GGCTGTGTTTCCTTTGAGGATGTGGCTGTTTACTTCTCCTGGGAGGAATGGACACTGCTCAATGACTCTCAAAGGCTTCTGTACCAGACGGTGATGACAGAGATCTTAGCACTCATGTCCTCTCTCG
Seq C2 exon
GACTTGTACCTTCCGGGATCCATGACATCACTCAGTTGGAGTCTTGGGGAGAGCCCTCTGTGCCTGCATTGAGATTCCTGACTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015598-'1-3,'1-2,2-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. ATG)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCAGTACTCAGTGAAACCTGC
R:
CTGGAGTCAGGAATCTCAATGCA
Band lengths:
122-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]