HsaEX7109034 @ hg38
Exon Skipping
Gene
ENSG00000105136 | ZNF419
Description
zinc finger protein 419 [Source:HGNC Symbol;Acc:HGNC:20648]
Coordinates
chr19:57490147-57492211:+
Coord C1 exon
chr19:57490147-57490185
Coord A exon
chr19:57491468-57491597
Coord C2 exon
chr19:57492113-57492211
Length
130 bp
Sequences
Splice sites
3' ss Seq
CTCTACTCTGTCCATCTTAGCAG
3' ss Score
5.38
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
Exon sequences
Seq C1 exon
GTTCCTGTGGCTGCAGACTTGCTTACAGACCATGAGGAG
Seq A exon
CAGGGCTATGTGACCTTTGAGGATGTGGCTGTCTACTTCTCCCAGGAGGAATGGAGATTGCTTGATGACGCTCAGAGGCTCCTCTACCGCAATGTGATGCTGGAGAACTTTACACTTCTGGCCTCTCTGG
Seq C2 exon
GACTTGCATCTTCCAAGACCCATGAAATAACCCAGCTGGAGTCATGGGAGGAGCCCTTCATGCCTGCTTGGGAAGTTGTGACTTCAGCCATACCGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000105136-'1-4,'1-2,2-4=AN
Average complexity
A_NA
Mappability confidence:
83%=100=75%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0135222=KRAB=WD(100=93.2)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTCCTGTGGCTGCAGACTTG
R:
CTCTCGGTATGGCTGAAGTCAC
Band lengths:
138-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains