MmuEX0053736 @ mm10
Exon Skipping
Gene
ENSMUSG00000062116 | Zfp954
Description
zinc finger protein 954 [Source:MGI Symbol;Acc:MGI:1917764]
Coordinates
chr7:7116613-7119410:-
Coord C1 exon
chr7:7119372-7119410
Coord A exon
chr7:7117786-7117912
Coord C2 exon
chr7:7116613-7116711
Length
127 bp
Sequences
Splice sites
3' ss Seq
TCAACTTTCCCCATGTGCAGGGC
3' ss Score
8.56
5' ss Seq
TGAGTAAGG
5' ss Score
5.02
Exon sequences
Seq C1 exon
GTTTCCCAGTATTCAGTGAAACCTGCCAACCAGGAAGAG
Seq A exon
GGCTGCGTGTCCTTTGAGGATGTGGCTGTGTACTTCTCCTGGGAGGAATGGACACTGCTCGATGACTCTCAAAGGCTCCTGTACCAGACTGTGATGACGGAGATCTTCACACTGGTGTCTTCACTGA
Seq C2 exon
GACTTGAACTTTCTGGGATTCATGATTCAACTCAGGTGGAATCTTGTGGAGATCTCTCTGTGCCTGCACTAAGATTCCTGACTCCGTGTTTATGGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000062116_MULTIEX1-2/4=C1-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0135222=KRAB=WD(100=95.3)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Skipping Isoform:
ENSMUST00000056246fB4728
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTTCCCAGTATTCAGTGAAACCTG
R:
CTGTCCATAAACACGGAGTCAGG
Band lengths:
138-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types