BtaEX0000769 @ bosTau6
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1MKJ3]
Coordinates
chr22:44268515-44272708:+
Coord C1 exon
chr22:44268515-44268624
Coord A exon
chr22:44272252-44272435
Coord C2 exon
chr22:44272568-44272708
Length
184 bp
Sequences
Splice sites
3' ss Seq
TGACTTCTTTTCCTTCATAGTTT
3' ss Score
9.28
5' ss Seq
GAGGTAATC
5' ss Score
7.05
Exon sequences
Seq C1 exon
GAATTTTTGGAATGTGCTCATGAAGCCTGCAAAGTACATAATCTTCAGCCTGTTAAATTTTTTCTTGAAAAAATGATTCAGACATATGAGATGATGATCGTTAGACACGG
Seq A exon
TTTTATGTTAGTAGGAGAGCCTTTTGCTGGTAAAACAAAAGTTCTGCATATGCTGGCTGATACTCTAACTCTTATGAATGAACGTGGCTGTGGAGAGGAAGAAAAAGTCATTTATAGGACTGTAAACCCCAAATCCATTACTATGGGCCAACTTTTTGGACAATTTGACCCAGTGTCCCATGAG
Seq C2 exon
TGGACTGATGGTATTGTAGCTAATACTTTTAGAGAATTTGCCTTATCAGAAACACCTGACCGGAAATGGGTTGTATTTGATGGTCCCATTGACACTTTGTGGATAGAGAGCATGAACACAGTACTGGACGATAATAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020802-'26-25,'26-24,27-25
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF077289=AAA_5=PU(0.1=0.0)
A:
PF077289=AAA_5=PU(42.4=98.4)
C2:
PF077289=AAA_5=FE(31.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAATTTTTGGAATGTGCTCATGAAG
R:
ATCGTCCAGTACTGTGTTCATGC
Band lengths:
242-426
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development