DreEX0027443 @ danRer10
Exon Skipping
Gene
ENSDARG00000059987 | dnah12
Description
dynein, axonemal, heavy chain 12 [Source:ZFIN;Acc:ZDB-GENE-090311-9]
Coordinates
chr23:19609588-19611768:-
Coord C1 exon
chr23:19611659-19611768
Coord A exon
chr23:19609806-19609989
Coord C2 exon
chr23:19609588-19609728
Length
184 bp
Sequences
Splice sites
3' ss Seq
TTAAATATCTTTAAAAATAGGTT
3' ss Score
6.22
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
Exon sequences
Seq C1 exon
TTGTTCTTGGAATGTGCTCATTTGTGCTGCGAAAACCACAATGTGCAACCTGTTAAAGTTTTCCTGGACAAAATTATCCAGACATACGAGATGATGATTGTTCGACATGG
Seq A exon
GTTCATGCTTGTCGGAGAACCATTTGCTGGAAAAACCAAAGTACTTCATGTTCTTGCTGATACTTTGACCCTGATGAATGAGTCGGGCTACAACGAAGAAGAAAAAGTAATTTACCAAACTGTCAATCCTAAATCCATCACGATGGGTCAGCTTTTTGGCCAATTTGATCCTGTGTCACATGAG
Seq C2 exon
TGGACTGATGGGATTGTGGCAAACACCTTTCGAGAATTTGCCTCAAGCGAGACCCCAGAGAGGAAATGGGTGGTGTTTGATGGCCCCATAGACACTCTGTGGATTGAGAGTATGAACACTGTGCTGGATGACAACAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000059987-'32-33,'32-32,33-33
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF077289=AAA_5=PU(0.1=0.0)
A:
PF077289=AAA_5=PU(42.4=98.4)
C2:
PF077289=AAA_5=FE(31.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTGGAATGTGCTCATTTGTGC
R:
TGTTGTCATCCAGCACAGTGT
Band lengths:
242-426
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]