MmuEX6040108 @ mm10
Exon Skipping
Gene
ENSMUSG00000021879 | Dnah12
Description
dynein, axonemal, heavy chain 12 [Source:MGI Symbol;Acc:MGI:107720]
Coordinates
chr14:26778802-26781806:+
Coord C1 exon
chr14:26778802-26778911
Coord A exon
chr14:26781346-26781529
Coord C2 exon
chr14:26781666-26781806
Length
184 bp
Sequences
Splice sites
3' ss Seq
TATATCTCTGTCTCTTATAGTTT
3' ss Score
9.88
5' ss Seq
GAGGTAATC
5' ss Score
7.05
Exon sequences
Seq C1 exon
GAATTTTTGGAATGTGCACATGAAACCTGCCAAACACATAATCTTCAGCCTGTTAAATTTTTTCTTGAAAAAATTATTCAGACATATGAAATGATGATTGTTCGACATGG
Seq A exon
TTTCATGTTGGTAGGAGAGCCTTTTGCTGCCAAGACAGAAGTGCTGCACGTGCTGGCGGACACGTTAACTCTTATGAATGAACGCAACTATGGAGACGAAGAAAAGGTCATGTATAGGACTGTAAACCCCAAATCAATTACTATGGGTCAACTTTTTGGGCAGTTTGACCCAGTGTCTCATGAG
Seq C2 exon
TGGACTGATGGTATTGTGGCAAACACATTTAGAGAATTTGCCTTAGCAGAATCACCTGACCGGAAGTGGGTTGTATTTGATGGTCCTATTGATACTTTGTGGATAGAGAGTATGAATACAGTATTGGATGATAATAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021879-'27-45,'27-34,34-45=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF077289=AAA_5=PU(0.1=0.0)
A:
PF077289=AAA_5=PU(42.4=98.4)
C2:
PF077289=AAA_5=FE(31.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGGAATGTGCACATGAAACCTG
R:
ACTGTATTCATACTCTCTATCCACAA
Band lengths:
226-410
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types